C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: potassium voltage-gated channel, Shaw-related subfamily, member 3a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000078249 kcnc3a-201 ENSDARG00000055855 7955 + 3:32098465-32197478 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000078249
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000078249 34.983±17.17 0.036±0.02 0.164±0.01 0.050±0.00 1.902±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005515 IEA protein binding
GO:0006811 IEA ion transport
GO:0016020 IEA membrane
GO:0051260 IEA protein homooligomerization
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025202 Kcnc1-001 protein_coding Mus_musculus 0 599
ENSMUST00000160433 Kcnc1-002 protein_coding Mus_musculus 0 599
ENST00000369787 KCNC4-004 protein_coding Homo_sapiens 0 573
ENST00000376959 KCNC3-002 protein_coding Homo_sapiens 0 651
ENST00000413138 KCNC4-006 protein_coding Homo_sapiens 0 573
ENST00000438661 KCNC4-003 protein_coding Homo_sapiens 0 573
ENST00000459877 KCNC4-002 retained_intron Homo_sapiens 0 560
ENST00000469655 KCNC4-001 nonsense_mediated_decay Homo_sapiens 0 573
ENST00000477616 KCNC3-005 protein_coding Homo_sapiens 0 651
ENST00000489935 KCNC4-005 retained_intron Homo_sapiens 0 573

Loading