C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: caudal type homeobox 1 b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000081993 cdx1b-201 ENSDARG00000058999 7955 - 21:42527977-42543419 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000081993
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000081993 0.269±0.33 0.103±0.13 1.325±0.46 0.081±0.00 0.451±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000976 IEA transcription regulatory region sequence-specific DNA binding
GO:0001706 IMP endoderm formation
GO:0001889 IMP liver development
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007275 IEA multicellular organismal development
GO:0030855 IMP epithelial cell differentiation
GO:0031016 IMP pancreas development
GO:0043565 IEA sequence-specific DNA binding
GO:0045893 IGI positive regulation of transcription, DNA-dependent
GO:0048546 IMP digestive tract morphogenesis
GO:0050673 IMP epithelial cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031650 Cdx2-001 protein_coding Mus_musculus 3.00004e-41 174
ENSMUST00000173348 Nkx1-1-001 protein_coding Mus_musculus 0.00002 55
ENST00000422806 NKX1-1-001 protein_coding Homo_sapiens 0.00002 55

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