C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NK1 transcription factor related, locus 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173348 Nkx1-1-001 ENSMUSG00000029112 10090 - 5:33430734-33433976 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyLiverOvaryPlacentaTestisENSMUST00000173348
Transcript ID Brain Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000173348 0.949±0.07 0.018±0.00 0.028±0.00 0.008±0.00 0.039±0.01 0.282±0.23 0.232±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TX CIL_0007TX_0002 VISTA 5:33275293-33875875
CIL_0006LY CIL_0006LY_0002 CGP 5:33430734-33629635

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006629 IMP lipid metabolic process
GO:0010906 IMP regulation of glucose metabolic process
GO:0043467 IMP regulation of generation of precursor metabolites and energy
GO:0043565 IEA sequence-specific DNA binding
GO:0050877 IMP neurological system process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000057730 dbx2-201 protein_coding Danio_rerio 0.0000000002 71
ENSDART00000081993 cdx1b-201 protein_coding Danio_rerio 0.00002 55
ENST00000343060 HOXA1-001 protein_coding Homo_sapiens 0.00000008 64
ENST00000355633 HOXA1-002 protein_coding Homo_sapiens 0.00000006 64
ENST00000422806 NKX1-1-001 protein_coding Homo_sapiens 0 1110
ENST00000451024 NKX1-2-001 protein_coding Homo_sapiens 0 233

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