C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NK1 homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000422806 NKX1-1-001 ENSG00000235608 9606 - 4:1402932-1406331 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENST00000422806
Transcript ID Testis
ENST00000422806 1.339±1.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TX CIL_0007TX_0001 VISTA 4:1311752-1912379
CIL_0006LY CIL_0006LY_0001 CGP 4:1402932-1684302

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006629 IEA lipid metabolic process
GO:0008150 ND biological_process
GO:0010906 IEA regulation of glucose metabolic process
GO:0043467 IEA regulation of generation of precursor metabolites and energy
GO:0043565 IEA sequence-specific DNA binding
GO:0050877 IEA neurological system process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000173348 Nkx1-1-001 protein_coding Mus_musculus 0 1110
ENSDART00000057730 dbx2-201 protein_coding Danio_rerio 0.00000001 66
ENSMUST00000123805 Hoxb1-002 processed_transcript Mus_musculus 0.00002 55
ENSMUST00000019117 Hoxb1-001 protein_coding Mus_musculus 0.00002 55
ENSDART00000081993 cdx1b-201 protein_coding Danio_rerio 0.00002 55

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