C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SLIT-ROBO Rho GTPase activating protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000084834 srgap3-001 ENSDARG00000060309 7955 + 6:41486111-41688045 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLiverMuscleENSDART00000084834
Transcript ID Heart Kidney Liver Muscle
ENSDART00000084834 0.415±0.26 0.440±0.22 0.070±0.00 0.183±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0007165 IEA signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000064376 Arhgap4-001 protein_coding Mus_musculus 0.000000000001 81
ENSMUST00000088373 Srgap3-001 protein_coding Mus_musculus 0 712
ENSMUST00000113169 Srgap3-004 protein_coding Mus_musculus 0 1759
ENSMUST00000114404 Arhgap4-013 protein_coding Mus_musculus 0.0000000000009 81
ENSMUST00000114405 Arhgap4-018 protein_coding Mus_musculus 0.000000000002 81
ENSMUST00000114406 Arhgap4-002 protein_coding Mus_musculus 0.0000000000008 81
ENSMUST00000114407 Arhgap4-009 protein_coding Mus_musculus 0.0000000000009 81
ENSMUST00000127163 Arhgap4-007 retained_intron Mus_musculus 0.0000000000008 81
ENSMUST00000130976 Arhgap4-003 nonsense_mediated_decay Mus_musculus 0.0000000000009 81
ENSMUST00000131835 Srgap3-006 nonsense_mediated_decay Mus_musculus 0 302
ENSMUST00000145159 Arhgap4-010 retained_intron Mus_musculus 0.000000000001 81
ENSMUST00000147510 Arhgap4-006 retained_intron Mus_musculus 0.0000000000008 81
ENSMUST00000148319 Arhgap4-005 retained_intron Mus_musculus 0.0000000000009 81
ENSMUST00000149774 Arhgap4-016 protein_coding Mus_musculus 0.0000000000002 81
ENSMUST00000151600 Arhgap4-008 retained_intron Mus_musculus 0.0000000000008 81
ENST00000355086 SRGAP1-001 protein_coding Homo_sapiens 0 375
ENST00000360413 SRGAP3-002 protein_coding Homo_sapiens 0 1899
ENST00000383836 SRGAP3-001 protein_coding Homo_sapiens 0 837
ENST00000491467 SRGAP3-007 retained_intron Homo_sapiens 1e-39 167
ENST00000543397 SRGAP1-003 protein_coding Homo_sapiens 0 675

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