C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SLIT-ROBO Rho GTPase activating protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355086 SRGAP1-001 ENSG00000196935 9606 + 12:63844293-64162221 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000355086
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000355086 0.615±0.00 1.027±0.00 0.268±0.00 0.120±0.03 0.407±0.14 0.325±0.00 0.041±0.01 0.180±0.08 0.380±0.06 0.046±0.00 0.583±0.18 0.158±0.11 0.598±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002KR CIL_0002KR_0002 CGP 12:63844293-64222296

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005100 IEA Rho GTPase activator activity
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0007165 IEA signal transduction
GO:0007264 TAS small GTPase mediated signal transduction
GO:0007266 IEA Rho protein signal transduction
GO:0007411 TAS axon guidance
GO:0016477 IEA cell migration
GO:0017048 IEA Rho GTPase binding
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0051056 TAS regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000081688 Srgap1-201 protein_coding Mus_musculus 0 4346
ENSMUST00000020322 Srgap1-001 protein_coding Mus_musculus 0 2313
ENSMUST00000161996 Srgap1-003 processed_transcript Mus_musculus 0 1633
ENSDART00000140403 srgap1-001 protein_coding Danio_rerio 0 1134
ENSMUST00000162710 Srgap1-002 retained_intron Mus_musculus 0 763
ENSDART00000088908 srgap1-201 protein_coding Danio_rerio 0 667
ENSDART00000084834 srgap3-001 protein_coding Danio_rerio 0 375
ENSMUST00000161156 Srgap1-004 protein_coding Mus_musculus 0 281
ENSMUST00000183937 Gm4707-013 protein_coding Mus_musculus 0.000000001 73
ENSMUST00000171561 Mms19-001 protein_coding Mus_musculus 0.00000002 69
ENSMUST00000167927 Mms19-006 nonsense_mediated_decay Mus_musculus 0.00000002 69
ENSMUST00000033498 Timm17b-001 protein_coding Mus_musculus 0.00000005 68
ENSMUST00000030501 Ebna1bp2-001 protein_coding Mus_musculus 0.00000005 68
ENSMUST00000146254 Cd300lf-002 processed_transcript Mus_musculus 0.00000005 68
ENSMUST00000171143 Fam102b-201 protein_coding Mus_musculus 0.00000005 68
ENSMUST00000046924 Fam102b-001 protein_coding Mus_musculus 0.00000005 68
ENSMUST00000115636 Suv39h1-004 protein_coding Mus_musculus 0.000009 60
ENSMUST00000091246 Flcn-005 protein_coding Mus_musculus 0.000009 60
ENSMUST00000148151 Flcn-003 retained_intron Mus_musculus 0.000009 60
ENSMUST00000102697 Flcn-004 protein_coding Mus_musculus 0.000009 60
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.000009 60
ENSMUST00000167619 Diap2-201 protein_coding Mus_musculus 0.000009 60
ENSMUST00000113320 Diap2-006 protein_coding Mus_musculus 0.000009 60
ENSMUST00000171415 Ndufb8-002 protein_coding Mus_musculus 0.00003 58
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.00003 58
ENSMUST00000021800 Mcur1-201 protein_coding Mus_musculus 0.0001 57

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