C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SLIT-ROBO Rho GTPase activating protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000543397 SRGAP1-003 ENSG00000196935 9606 + 12:63982525-64143780 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000543397
Transcript ID Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000543397 0.492±0.00 0.451±0.03 0.765±0.00 0.668±0.00 0.199±0.06 0.551±0.00 0.673±0.33 0.080±0.05 0.407±0.00 0.225±0.05 1.244±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002KR CIL_0002KR_0002 CGP 12:63844293-64222296

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0007165 IEA signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020322 Srgap1-001 protein_coding Mus_musculus 0 4023
ENSMUST00000081688 Srgap1-201 protein_coding Mus_musculus 0 2313
ENSMUST00000161996 Srgap1-003 processed_transcript Mus_musculus 0 1633
ENSDART00000088908 srgap1-201 protein_coding Danio_rerio 0 1419
ENSDART00000084834 srgap3-001 protein_coding Danio_rerio 0 675
ENSDART00000140403 srgap1-001 protein_coding Danio_rerio 0 667
ENSMUST00000162710 Srgap1-002 retained_intron Mus_musculus 0 564
ENSMUST00000161156 Srgap1-004 protein_coding Mus_musculus 0 281

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