C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: potassium voltage-gated channel, Shaw-related subfamily, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000087293 kcnc4-201 ENSDARG00000061288 7955 - 8:25779021-25818251 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000087293
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000087293 2.824±1.69 0.972±0.47 0.321±0.08 0.025±0.00 2.402±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006U2 CIL_0006U2_0001 CGP 8:25714204-25818251

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005244 IEA voltage-gated ion channel activity
GO:0005249 IEA voltage-gated potassium channel activity
GO:0005251 IBA delayed rectifier potassium channel activity
GO:0005267 IEA potassium channel activity
GO:0005515 IEA protein binding
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0006813 IEA potassium ion transport
GO:0008076 IEA voltage-gated potassium channel complex
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0034765 IBA regulation of ion transmembrane transport
GO:0051260 IEA protein homooligomerization
GO:0055085 IEA transmembrane transport
GO:0071805 IBA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025202 Kcnc1-001 protein_coding Mus_musculus 0 215
ENSMUST00000092175 Kcnc2-201 protein_coding Mus_musculus 0 209
ENSMUST00000160433 Kcnc1-002 protein_coding Mus_musculus 0 215
ENST00000265969 KCNC1-002 protein_coding Homo_sapiens 0 392
ENST00000298972 KCNC2-201 protein_coding Homo_sapiens 0 243
ENST00000350228 KCNC2-004 protein_coding Homo_sapiens 0 243
ENST00000369771 KCNA10-001 protein_coding Homo_sapiens 0.000000001 69
ENST00000379472 KCNC1-001 protein_coding Homo_sapiens 0 392
ENST00000393288 KCNC2-002 protein_coding Homo_sapiens 0 243
ENST00000540018 KCNC2-003 protein_coding Homo_sapiens 0 243
ENST00000548513 KCNC2-006 protein_coding Homo_sapiens 0 243
ENST00000549446 KCNC2-001 protein_coding Homo_sapiens 0 243
ENST00000550433 KCNC2-005 protein_coding Homo_sapiens 0 243

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