C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: recombination signal binding protein for immunoglobulin kappa J region b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000092580 rbpjb-001 ENSDARG00000052091 7955 + 7:62723096-62849573 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLiverMuscleENSDART00000092580
Transcript ID Heart Kidney Liver Muscle
ENSDART00000092580 1.034±0.18 0.474±0.11 0.166±0.00 0.476±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000343 CIL_000343_0001 CGP 7:62646745-62849573
CIL_0002TR CIL_0002TR_0001 CGP 7:62723096-62887024

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000982 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity
GO:0001756 IGI somitogenesis
GO:0002040 IGI sprouting angiogenesis
GO:0003140 IGI determination of left/right asymmetry in lateral mesoderm
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007368 IGI determination of left/right symmetry
GO:0007507 IGI heart development
GO:0022008 IMP neurogenesis
GO:0030325 IGI adrenal gland development
GO:0039021 IGI pronephric glomerulus development
GO:0039022 IGI pronephric duct development
GO:0060840 IGI artery development
GO:0072149 IGI glomerular visceral epithelial cell fate commitment

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113865 Rbpj-203 protein_coding Mus_musculus 0 1092
ENST00000342295 RBPJ-201 protein_coding Homo_sapiens 0 1026
ENST00000342320 RBPJ-003 protein_coding Homo_sapiens 0 1024
ENST00000345843 RBPJ-001 protein_coding Homo_sapiens 0 1024
ENST00000348160 RBPJ-030 protein_coding Homo_sapiens 0 1118
ENST00000355476 RBPJ-202 protein_coding Homo_sapiens 0 1024
ENST00000361572 RBPJ-002 protein_coding Homo_sapiens 0 1026
ENST00000411556 RBPJP6-001 processed_pseudogene Homo_sapiens 0 667
ENST00000442803 RBPJP7-001 processed_pseudogene Homo_sapiens 0 675
ENST00000449433 RBPJP5-001 processed_pseudogene Homo_sapiens 0 675
ENST00000504907 RBPJ-010 protein_coding Homo_sapiens 0 802
ENST00000504938 RBPJ-020 protein_coding Homo_sapiens 0 359
ENST00000507561 RBPJ-007 protein_coding Homo_sapiens 0 1022
ENST00000507574 RBPJ-015 protein_coding Homo_sapiens 0 377
ENST00000509158 RBPJ-013 protein_coding Homo_sapiens 2e-18 97
ENST00000510725 RBPJ-027 retained_intron Homo_sapiens 0 268
ENST00000510778 RBPJ-029 protein_coding Homo_sapiens 0 390
ENST00000511401 RBPJ-022 processed_transcript Homo_sapiens 0.000000005 66
ENST00000511451 RBPJ-021 retained_intron Homo_sapiens 0 359
ENST00000512671 RBPJ-005 protein_coding Homo_sapiens 0 361
ENST00000513182 RBPJ-024 nonsense_mediated_decay Homo_sapiens 4e-39 165
ENST00000514380 RBPJ-009 retained_intron Homo_sapiens 0 806
ENST00000515023 RBPJ-023 processed_transcript Homo_sapiens 1e-32 143
ENST00000515573 RBPJ-017 protein_coding Homo_sapiens 0 444
ENST00000618187 RP11-120E5.1-001 processed_pseudogene Homo_sapiens 0 684

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