C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: recombination signal binding protein for immunoglobulin kappa J region
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000510778 RBPJ-029 ENSG00000168214 9606 + 4:26272607-26424426 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000343 CIL_000343_0002 CGP 4:25861830-26435131
CIL_0002TR CIL_0002TR_0002 CGP 4:26163455-26490462

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000982 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 IEA transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000182751 Rbpsuh-rs3-001 processed_pseudogene Mus_musculus 0 798
ENSMUST00000087360 Rbpj-202 protein_coding Mus_musculus 0 797
ENSMUST00000113865 Rbpj-203 protein_coding Mus_musculus 0 795
ENSMUST00000037618 Rbpj-201 protein_coding Mus_musculus 0 795
ENSMUST00000119456 Rbpsuh-ps1-001 processed_pseudogene Mus_musculus 0 604
ENSDART00000092580 rbpjb-001 protein_coding Danio_rerio 0 390

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