C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATPase, Ca++ transporting, plasma membrane 1b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000104353 atp2b1b-001 ENSDARG00000007788 7955 - 25:20099785-20145924 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000104353
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000104353 0.640±0.22 1.165±0.26 1.029±0.02 0.063±0.00 0.046±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005388 IEA calcium-transporting ATPase activity
GO:0005524 IEA ATP binding
GO:0006812 IEA cation transport
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0016787 IEA hydrolase activity
GO:0019829 IEA cation-transporting ATPase activity
GO:0046872 IEA metal ion binding
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033744 Atp2b3-003 protein_coding Mus_musculus 0 998
ENSMUST00000088429 Atp2b3-001 protein_coding Mus_musculus 0 1018
ENSMUST00000089003 Atp2b2-004 protein_coding Mus_musculus 0 874
ENSMUST00000101044 Atp2b2-003 protein_coding Mus_musculus 0 874
ENSMUST00000101045 Atp2b2-001 protein_coding Mus_musculus 0 874
ENSMUST00000114479 Atp2b3-002 protein_coding Mus_musculus 0 1002
ENSMUST00000152831 Atp2b2-002 nonsense_mediated_decay Mus_musculus 0 863
ENST00000261173 ATP2B1-201 protein_coding Homo_sapiens 0 449
ENST00000359142 ATP2B1-002 protein_coding Homo_sapiens 0 449
ENST00000428670 ATP2B1-001 protein_coding Homo_sapiens 0 449
ENST00000549585 ATP2B1-006 retained_intron Homo_sapiens 0 204

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