C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATPase, Ca++ transporting, plasma membrane 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000089003 Atp2b2-004 ENSMUSG00000030302 10090 - 6:113745669-113891539 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMusclePlacentaENSMUST00000089003
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Placenta
ENSMUST00000089003 0.643±0.11 0.705±0.17 12.306±10.16 0.034±0.00 0.128±0.01 0.108±0.00 0.123±0.03 0.384±0.20 0.033±0.00 0.044±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064R CIL_00064R_0002 CGP 6:113728067-114042613
CIL_0001NW CIL_0001NW_0002 CGP 6:113745669-114249886

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000902 IMP cell morphogenesis
GO:0005388 ISS calcium-transporting ATPase activity
GO:0005509 ISS calcium ion binding
GO:0005515 IEA protein binding
GO:0005516 ISS calmodulin binding
GO:0005524 ISS ATP binding
GO:0005737 ISS cytoplasm
GO:0005783 IDA endoplasmic reticulum
GO:0005886 ISS plasma membrane
GO:0005929 IDA cilium
GO:0006200 IMP ATP catabolic process
GO:0006816 IMP calcium ion transport
GO:0006874 IMP cellular calcium ion homeostasis
GO:0006996 IMP organelle organization
GO:0007595 IMP lactation
GO:0007605 ISS sensory perception of sound
GO:0007626 IMP locomotory behavior
GO:0008022 ISS protein C-terminus binding
GO:0008361 IMP regulation of cell size
GO:0016021 IEA integral component of membrane
GO:0016324 IDA apical plasma membrane
GO:0021549 IMP cerebellum development
GO:0021692 IMP cerebellar Purkinje cell layer morphogenesis
GO:0021702 IMP cerebellar Purkinje cell differentiation
GO:0021707 IMP cerebellar granule cell differentiation
GO:0030165 ISS PDZ domain binding
GO:0030182 ISS neuron differentiation
GO:0030899 IMP calcium-dependent ATPase activity
GO:0040011 IMP locomotion
GO:0042428 IMP serotonin metabolic process
GO:0042472 IMP inner ear morphogenesis
GO:0043025 IDA neuronal cell body
GO:0045299 IMP otolith mineralization
GO:0046068 IMP cGMP metabolic process
GO:0048167 IMP regulation of synaptic plasticity
GO:0048839 IMP inner ear development
GO:0050808 IMP synapse organization
GO:0050885 IMP neuromuscular process controlling balance
GO:0050910 IMP detection of mechanical stimulus involved in sensory perception of sound
GO:0051480 IMP cytosolic calcium ion homeostasis
GO:0051928 IMP positive regulation of calcium ion transport
GO:0060088 IMP auditory receptor cell stereocilium organization
GO:0060113 IMP inner ear receptor cell differentiation
GO:0070588 IEA calcium ion transmembrane transport
GO:0090102 IMP cochlea development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000092726 atp2b2-201 protein_coding Danio_rerio 0 1969
ENSDART00000135811 atp2b3a-001 protein_coding Danio_rerio 0 1325
ENSDART00000090252 atp2b3a-202 protein_coding Danio_rerio 0 1319
ENSDART00000093117 atp2b3a-002 protein_coding Danio_rerio 0 1319
ENSDART00000104353 atp2b1b-001 protein_coding Danio_rerio 0 874
ENSDART00000045917 atp2b3a-201 protein_coding Danio_rerio 0 604
ENST00000263519 ATP2B3-201 protein_coding Homo_sapiens 0 2113
ENST00000341360 ATP2B4-002 protein_coding Homo_sapiens 0 1304
ENST00000349466 ATP2B3-002 protein_coding Homo_sapiens 0 2113
ENST00000352432 ATP2B2-001 protein_coding Homo_sapiens 0 3818
ENST00000357681 ATP2B4-001 protein_coding Homo_sapiens 0 1315
ENST00000359149 ATP2B3-006 protein_coding Homo_sapiens 0 2004
ENST00000360273 ATP2B2-201 protein_coding Homo_sapiens 0 3818
ENST00000367218 ATP2B4-201 protein_coding Homo_sapiens 0 1304
ENST00000370186 ATP2B3-001 protein_coding Homo_sapiens 0 2536
ENST00000383800 ATP2B2-002 protein_coding Homo_sapiens 0 5406
ENST00000393842 ATP2B3-004 protein_coding Homo_sapiens 0 2536
ENST00000397077 ATP2B2-005 protein_coding Homo_sapiens 0 5291
ENST00000452124 ATP2B2-003 protein_coding Homo_sapiens 0 3818
ENST00000460129 ATP2B2-004 nonsense_mediated_decay Homo_sapiens 0 4711
ENST00000460549 ATP2B3-003 processed_transcript Homo_sapiens 0 403
ENST00000467702 ATP2B2-006 processed_transcript Homo_sapiens 0 586
ENST00000468426 ATP2B2-009 processed_transcript Homo_sapiens 0 529
ENST00000480680 ATP2B2-008 retained_intron Homo_sapiens 0 1565

Loading