C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY-box containing gene 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000112979 sox10-001 ENSDARG00000077467 7955 + 3:2551636-2560717 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000112979
Transcript ID Brain Heart Kidney Muscle
ENSDART00000112979 7.247±1.28 0.194±0.13 0.855±0.31 2.774±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001755 IMP neural crest cell migration
GO:0010001 IGI glial cell differentiation
GO:0010628 IGI positive regulation of gene expression
GO:0014037 IMP Schwann cell differentiation
GO:0014044 IMP Schwann cell development
GO:0030318 IGI melanocyte differentiation
GO:0048484 IMP enteric nervous system development
GO:0048709 IMP oligodendrocyte differentiation
GO:0048752 IMP semicircular canal morphogenesis
GO:0048839 IMP inner ear development
GO:0048840 IMP otolith development
GO:0050768 IMP negative regulation of neurogenesis
GO:0071600 IMP otic vesicle morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000063332 Sox12-201 protein_coding Mus_musculus 0.0000005 62
ENSMUST00000182625 Sox12-002 protein_coding Mus_musculus 0.0000005 62
ENST00000250055 SOX15-001 protein_coding Homo_sapiens 0.0000005 60
ENST00000293894 SOX8-001 protein_coding Homo_sapiens 0 228
ENST00000322002 SOX11-001 protein_coding Homo_sapiens 0.0000000000007 82
ENST00000538513 SOX15-002 protein_coding Homo_sapiens 0.0000004 60
ENST00000566034 SOX8-002 retained_intron Homo_sapiens 7e-40 171
ENST00000570788 SOX15-003 protein_coding Homo_sapiens 0.0000004 60

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