C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY (sex determining region Y)-box 15
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000250055 SOX15-001 ENSG00000129194 9606 - 17:7588178-7590170 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000981 IEA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003677 NAS DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 NAS nucleus
GO:0005737 IEA cytoplasm
GO:0006325 NAS chromatin organization
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0008584 TAS male gonad development
GO:0014718 ISS positive regulation of satellite cell activation involved in skeletal muscle regeneration
GO:0030154 ISS cell differentiation
GO:0043403 IEA skeletal muscle tissue regeneration
GO:0044798 IEA nuclear transcription factor complex
GO:0045843 ISS negative regulation of striated muscle tissue development
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IEA protein heterodimerization activity
GO:0048627 ISS myoblast development
GO:0070318 ISS positive regulation of G0 to G1 transition
GO:2000288 ISS positive regulation of myoblast proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047373 Sox15-001 protein_coding Mus_musculus 0 582
ENSMUST00000135107 Sox3-001 protein_coding Mus_musculus 1.99993e-41 174
ENSMUST00000063332 Sox12-201 protein_coding Mus_musculus 2e-25 121
ENSMUST00000182625 Sox12-002 protein_coding Mus_musculus 2e-25 121
ENSDART00000112979 sox10-001 protein_coding Danio_rerio 0.0000005 60

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