C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: patched 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000121923 ptch1-202 ENSDARG00000016404 7955 + 8:30811066-30918608 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000121923
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000121923 3.000±1.18 0.856±0.32 1.092±0.23 0.144±0.00 1.374±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001649 IMP osteoblast differentiation
GO:0001957 IMP intramembranous ossification
GO:0008158 IEA hedgehog receptor activity
GO:0010002 IGI cardioblast differentiation
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0045879 IMP negative regulation of smoothened signaling pathway
GO:0048635 IGI negative regulation of muscle organ development
GO:0060041 IMP retina development in camera-type eye
GO:0060042 IMP retina morphogenesis in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021921 Ptch1-201 protein_coding Mus_musculus 1e-35 158
ENST00000331920 PTCH1-001 protein_coding Homo_sapiens 0 665
ENST00000375274 PTCH1-007 protein_coding Homo_sapiens 0 665
ENST00000375290 PTCH1-015 nonsense_mediated_decay Homo_sapiens 0 579
ENST00000418258 PTCH1-201 protein_coding Homo_sapiens 0 665
ENST00000421141 PTCH1-202 protein_coding Homo_sapiens 0 665
ENST00000429896 PTCH1-002 protein_coding Homo_sapiens 0 665
ENST00000430669 PTCH1-003 protein_coding Homo_sapiens 0 665
ENST00000437951 PTCH1-203 protein_coding Homo_sapiens 0 665
ENST00000547615 PTCH1-024 processed_transcript Homo_sapiens 0 292

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