C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: patched 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000375290 PTCH1-015 ENSG00000185920 9606 - 9:95443412-95506599 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastHeartKidneyLiverLungOvaryTestisENST00000375290
Transcript ID Adrenal Bladder Breast Heart Kidney Liver Lung Ovary Testis
ENST00000375290 0.251±0.00 0.205±0.00 0.237±0.00 0.058±0.00 0.023±0.00 0.547±0.00 0.369±0.00 0.297±0.14 0.685±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002J8 CIL_0002J8_0001 CGP 9:95099054-95517057
CIL_00086R CIL_00086R_0001 VISTA 9:95195577-95797123
CIL_0008KR CIL_0008KR_0001 VISTA 9:95212060-95813032
CIL_0002J7 CIL_0002J7_0001 CGP 9:95442980-96014571

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008158 IEA hedgehog receptor activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021921 Ptch1-201 protein_coding Mus_musculus 0 2130
ENSDART00000121923 ptch1-202 protein_coding Danio_rerio 0 579
ENSDART00000007640 ptch1-201 protein_coding Danio_rerio 0 579
ENSDART00000148258 ptch1-001 protein_coding Danio_rerio 0 579

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