C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif containing 23
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000127581 trim23-001 ENSDARG00000069420 7955 - 10:11756777-11806249 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverMuscleENSDART00000127581
Transcript ID Brain Heart Liver Muscle
ENSDART00000127581 13.749±8.81 1.918±0.63 0.411±0.00 1.660±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007G9 CIL_0007G9_0001 CGP 10:11733687-11806249

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0004871 IEA signal transducer activity
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006886 IEA intracellular protein transport
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008270 IEA zinc ion binding
GO:0015031 IEA protein transport
GO:0019001 IEA guanyl nucleotide binding
GO:0031683 IEA G-protein beta/gamma-subunit complex binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022225 Trim23-001 protein_coding Mus_musculus 0 872
ENSMUST00000069174 Trim23-004 protein_coding Mus_musculus 0 863
ENSMUST00000069187 Trim23-002 protein_coding Mus_musculus 0 532
ENST00000231524 TRIM23-001 protein_coding Homo_sapiens 0 826
ENST00000274327 TRIM23-002 protein_coding Homo_sapiens 0 747
ENST00000381018 TRIM23-003 protein_coding Homo_sapiens 0 778
ENST00000505205 TRIM23-005 nonsense_mediated_decay Homo_sapiens 1e-21 108

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