C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif-containing 23
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022225 Trim23-001 ENSMUSG00000021712 10090 + 13:104178797-104203017 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022225
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022225 1.889±0.26 1.160±0.43 6.423±0.12 10.387±2.44 1.702±0.68 1.379±0.50 2.445±0.23 2.104±0.56 2.898±1.64 2.885±0.60 4.432±0.70 3.160±1.68 5.116±1.76 5.328±1.16

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 ISS Golgi membrane
GO:0003924 ISS GTPase activity
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005525 ISS GTP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005765 ISS lysosomal membrane
GO:0006184 ISS GTP catabolic process
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008270 IEA zinc ion binding
GO:0016567 ISS protein ubiquitination
GO:0016874 IEA ligase activity
GO:0019003 ISS GDP binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000127581 trim23-001 protein_coding Danio_rerio 0 872
ENSDART00000101032 trim23-201 protein_coding Danio_rerio 0 671
ENST00000231524 TRIM23-001 protein_coding Homo_sapiens 0 2471
ENST00000274327 TRIM23-002 protein_coding Homo_sapiens 0 2250
ENST00000381018 TRIM23-003 protein_coding Homo_sapiens 0 2298
ENST00000505205 TRIM23-005 nonsense_mediated_decay Homo_sapiens 0 472
ENST00000506400 TRIM23-006 nonsense_mediated_decay Homo_sapiens 0 333
ENST00000508808 TRIM23-007 processed_transcript Homo_sapiens 0 292

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