C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATPase, Ca++ transporting, plasma membrane 1a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000128079 atp2b1a-202 ENSDARG00000012684 7955 - 4:15143525-15177518 protein_coding

Danio rerio EnsemblZv9

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000128079
Transcript ID Brain Heart Kidney Muscle
ENSDART00000128079 17.347±1.22 1.549±0.80 6.515±1.21 2.660±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005388 IEA calcium-transporting ATPase activity
GO:0005524 IEA ATP binding
GO:0006812 IEA cation transport
GO:0007605 IMP sensory perception of sound
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0016787 IEA hydrolase activity
GO:0019829 IEA cation-transporting ATPase activity
GO:0046872 IEA metal ion binding
GO:0048840 IMP otolith development
GO:0048919 IMP posterior lateral line neuromast development
GO:0060119 IMP inner ear receptor cell development
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033744 Atp2b3-003 protein_coding Mus_musculus 0 1053
ENSMUST00000088429 Atp2b3-001 protein_coding Mus_musculus 0 1109
ENSMUST00000114479 Atp2b3-002 protein_coding Mus_musculus 0 1057
ENST00000352432 ATP2B2-001 protein_coding Homo_sapiens 0 1182
ENST00000360273 ATP2B2-201 protein_coding Homo_sapiens 0 1182
ENST00000383800 ATP2B2-002 protein_coding Homo_sapiens 0 1175
ENST00000397077 ATP2B2-005 protein_coding Homo_sapiens 0 1175
ENST00000452124 ATP2B2-003 protein_coding Homo_sapiens 0 1192
ENST00000460129 ATP2B2-004 nonsense_mediated_decay Homo_sapiens 0 1070

Loading