C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 6, group A, member 1a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000130361 nr6a1a-202 ENSDARG00000018030 7955 + 8:54781728-54803229 protein_coding

Danio rerio EnsemblZv9

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Genes
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyENSDART00000130361
Transcript ID Brain Kidney
ENSDART00000130361 0.051±0.04 0.006±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0008270 IEA zinc ion binding
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000044858 Rxrb-001 protein_coding Mus_musculus 0.0000003 62
ENSMUST00000116612 Rxrb-003 protein_coding Mus_musculus 0.0000002 62
ENSMUST00000173354 Rxrb-002 protein_coding Mus_musculus 0.0000002 62
ENSMUST00000173554 Rxrb-004 protein_coding Mus_musculus 0.00000009 62
ENSMUST00000174130 Rxrb-005 retained_intron Mus_musculus 0.00000005 62
ENSMUST00000174299 Rxrb-010 protein_coding Mus_musculus 0.0000002 62
ENSMUST00000174740 Rxrb-006 retained_intron Mus_musculus 0.00000007 62

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