C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoid X receptor beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000116612 Rxrb-003 ENSMUSG00000039656 10090 + 17:34032401-34038393 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000116612
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000116612 7.596±0.76 5.630±1.12 6.738±3.76 5.488±2.92 6.189±0.38 6.600±0.85 4.757±1.20 8.697±1.10 9.731±1.97 5.985±2.74 2.591±0.81

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001701 IGI in utero embryonic development
GO:0001893 IGI maternal placenta development
GO:0003707 IEA steroid hormone receptor activity
GO:0004886 IDA 9-cis retinoic acid receptor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0042803 IDA protein homodimerization activity
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IGI sequence-specific DNA binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0048384 IDA retinoic acid receptor signaling pathway
GO:0055012 IGI ventricular cardiac muscle cell differentiation
GO:0060038 IGI cardiac muscle cell proliferation
GO:0071300 IDA cellular response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000016321 rxrab-001 protein_coding Danio_rerio 0 431
ENSDART00000002554 rxrgb-001 protein_coding Danio_rerio 0 381
ENSDART00000100982 nr6a1a-201 protein_coding Danio_rerio 0.0000002 62
ENSDART00000130361 nr6a1a-202 protein_coding Danio_rerio 0.0000002 62
ENSDART00000006409 nr6a1a-001 protein_coding Danio_rerio 0.0000002 62
ENST00000359842 RXRG-001 protein_coding Homo_sapiens 0 366
ENST00000374680 RXRB-001 protein_coding Homo_sapiens 0 1751
ENST00000374685 RXRB-002 protein_coding Homo_sapiens 0 1696
ENST00000383216 RXRB-002 protein_coding Homo_sapiens 0 1690
ENST00000383217 RXRB-001 protein_coding Homo_sapiens 0 1746
ENST00000415157 RXRB-001 protein_coding Homo_sapiens 0 1751
ENST00000415668 RXRB-005 protein_coding Homo_sapiens 0 237
ENST00000415909 RXRB-001 protein_coding Homo_sapiens 0 1746
ENST00000428813 RXRB-005 protein_coding Homo_sapiens 0 237
ENST00000431161 RXRB-002 protein_coding Homo_sapiens 0 1690
ENST00000431820 RXRB-001 protein_coding Homo_sapiens 0 1746
ENST00000436753 RXRB-001 protein_coding Homo_sapiens 0 1746
ENST00000437617 RXRB-005 protein_coding Homo_sapiens 0 237
ENST00000441299 RXRB-005 protein_coding Homo_sapiens 0 237
ENST00000443603 RXRB-002 protein_coding Homo_sapiens 0 1690
ENST00000451068 RXRB-005 protein_coding Homo_sapiens 0 237
ENST00000455462 RXRB-002 protein_coding Homo_sapiens 0 1696
ENST00000456244 RXRB-002 protein_coding Homo_sapiens 0 1690
ENST00000462174 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 1567
ENST00000462452 RXRB-006 retained_intron Homo_sapiens 0 357
ENST00000463338 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 1561
ENST00000465169 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 1561
ENST00000467727 RXRB-003 retained_intron Homo_sapiens 0 726
ENST00000468440 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 1561
ENST00000471999 RXRB-006 retained_intron Homo_sapiens 0 357
ENST00000472425 RXRB-003 retained_intron Homo_sapiens 0 726
ENST00000473482 RXRB-006 retained_intron Homo_sapiens 0 357
ENST00000481441 RXRB-003 retained_intron Homo_sapiens 0 726
ENST00000482725 RXRB-006 retained_intron Homo_sapiens 0 357
ENST00000483281 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 1567
ENST00000483648 RXRB-003 retained_intron Homo_sapiens 0 726
ENST00000483821 RXRB-006 retained_intron Homo_sapiens 0 357
ENST00000485267 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 1561
ENST00000486581 RXRB-006 retained_intron Homo_sapiens 0 357
ENST00000488725 RXRB-003 retained_intron Homo_sapiens 0 726
ENST00000494616 RXRB-003 retained_intron Homo_sapiens 0 726
ENST00000528918 RXRB-008 retained_intron Homo_sapiens 0 730
ENST00000531100 RXRB-007 protein_coding Homo_sapiens 0 1339
ENST00000619224 RXRG-201 protein_coding Homo_sapiens 0 366

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