C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoid X receptor beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000174130 Rxrb-005 ENSMUSG00000039656 10090 + 17:34033908-34036373 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainPlacentaTestisENSMUST00000174130
Transcript ID Brain Placenta Testis
ENSMUST00000174130 19.327±0.00 7.437±0.00 4.931±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000100982 nr6a1a-201 protein_coding Danio_rerio 0.00000005 62
ENSDART00000130361 nr6a1a-202 protein_coding Danio_rerio 0.00000005 62
ENSDART00000006409 nr6a1a-001 protein_coding Danio_rerio 0.00000005 62
ENST00000374680 RXRB-001 protein_coding Homo_sapiens 0 549
ENST00000374685 RXRB-002 protein_coding Homo_sapiens 0 549
ENST00000383216 RXRB-002 protein_coding Homo_sapiens 0 549
ENST00000383217 RXRB-001 protein_coding Homo_sapiens 0 549
ENST00000415157 RXRB-001 protein_coding Homo_sapiens 0 549
ENST00000415909 RXRB-001 protein_coding Homo_sapiens 0 549
ENST00000431161 RXRB-002 protein_coding Homo_sapiens 0 549
ENST00000431820 RXRB-001 protein_coding Homo_sapiens 0 549
ENST00000436753 RXRB-001 protein_coding Homo_sapiens 0 549
ENST00000443603 RXRB-002 protein_coding Homo_sapiens 0 549
ENST00000455462 RXRB-002 protein_coding Homo_sapiens 0 549
ENST00000456244 RXRB-002 protein_coding Homo_sapiens 0 549
ENST00000462174 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 549
ENST00000463338 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 549
ENST00000465169 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 549
ENST00000467727 RXRB-003 retained_intron Homo_sapiens 0 473
ENST00000468440 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 549
ENST00000472425 RXRB-003 retained_intron Homo_sapiens 0 473
ENST00000481441 RXRB-003 retained_intron Homo_sapiens 0 473
ENST00000483281 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 549
ENST00000483648 RXRB-003 retained_intron Homo_sapiens 0 473
ENST00000485267 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 549
ENST00000488725 RXRB-003 retained_intron Homo_sapiens 0 473
ENST00000494616 RXRB-003 retained_intron Homo_sapiens 0 473
ENST00000528918 RXRB-008 retained_intron Homo_sapiens 0 549
ENST00000531100 RXRB-007 protein_coding Homo_sapiens 0 549

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