C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoid X receptor beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000044858 Rxrb-001 ENSMUSG00000039656 10090 + 17:34031812-34038393 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000044858
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000044858 7.935±1.84 43.863±8.24 11.450±0.68 33.191±13.17 21.181±8.06 24.545±2.97 5.086±2.13 10.363±1.60 6.675±1.44 20.515±6.47 4.825±0.96 27.206±7.56 4.283±2.25 4.764±1.22

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001228 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001701 IGI in utero embryonic development
GO:0001893 IGI maternal placenta development
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 IEA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0004886 IDA 9-cis retinoic acid receptor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0042803 IDA protein homodimerization activity
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IGI sequence-specific DNA binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0048384 IDA retinoic acid receptor signaling pathway
GO:0055012 IGI ventricular cardiac muscle cell differentiation
GO:0060038 IGI cardiac muscle cell proliferation
GO:0071300 IDA cellular response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000016321 rxrab-001 protein_coding Danio_rerio 0 387
ENSDART00000002554 rxrgb-001 protein_coding Danio_rerio 0 337
ENSDART00000100982 nr6a1a-201 protein_coding Danio_rerio 0.0000003 62
ENSDART00000130361 nr6a1a-202 protein_coding Danio_rerio 0.0000003 62
ENSDART00000006409 nr6a1a-001 protein_coding Danio_rerio 0.0000003 62
ENST00000359842 RXRG-001 protein_coding Homo_sapiens 0 322
ENST00000374680 RXRB-001 protein_coding Homo_sapiens 0 1696
ENST00000374685 RXRB-002 protein_coding Homo_sapiens 0 1773
ENST00000383216 RXRB-002 protein_coding Homo_sapiens 0 1768
ENST00000383217 RXRB-001 protein_coding Homo_sapiens 0 1690
ENST00000415157 RXRB-001 protein_coding Homo_sapiens 0 1696
ENST00000415668 RXRB-005 protein_coding Homo_sapiens 1.96182e-44 182
ENST00000415909 RXRB-001 protein_coding Homo_sapiens 0 1690
ENST00000428813 RXRB-005 protein_coding Homo_sapiens 1.96182e-44 182
ENST00000431161 RXRB-002 protein_coding Homo_sapiens 0 1768
ENST00000431820 RXRB-001 protein_coding Homo_sapiens 0 1690
ENST00000436753 RXRB-001 protein_coding Homo_sapiens 0 1690
ENST00000437617 RXRB-005 protein_coding Homo_sapiens 1.96182e-44 182
ENST00000441299 RXRB-005 protein_coding Homo_sapiens 1.96182e-44 182
ENST00000443603 RXRB-002 protein_coding Homo_sapiens 0 1768
ENST00000451068 RXRB-005 protein_coding Homo_sapiens 1.96182e-44 182
ENST00000455462 RXRB-002 protein_coding Homo_sapiens 0 1773
ENST00000456244 RXRB-002 protein_coding Homo_sapiens 0 1768
ENST00000462174 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 1511
ENST00000462452 RXRB-006 retained_intron Homo_sapiens 0 357
ENST00000463338 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 1506
ENST00000465169 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 1506
ENST00000467727 RXRB-003 retained_intron Homo_sapiens 0 726
ENST00000468440 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 1506
ENST00000471999 RXRB-006 retained_intron Homo_sapiens 0 357
ENST00000472425 RXRB-003 retained_intron Homo_sapiens 0 726
ENST00000473482 RXRB-006 retained_intron Homo_sapiens 0 357
ENST00000481441 RXRB-003 retained_intron Homo_sapiens 0 726
ENST00000482725 RXRB-006 retained_intron Homo_sapiens 0 357
ENST00000483281 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 1511
ENST00000483648 RXRB-003 retained_intron Homo_sapiens 0 726
ENST00000483821 RXRB-006 retained_intron Homo_sapiens 0 357
ENST00000485267 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 1506
ENST00000486581 RXRB-006 retained_intron Homo_sapiens 0 357
ENST00000488725 RXRB-003 retained_intron Homo_sapiens 0 726
ENST00000494616 RXRB-003 retained_intron Homo_sapiens 0 726
ENST00000528918 RXRB-008 retained_intron Homo_sapiens 0 730
ENST00000531100 RXRB-007 protein_coding Homo_sapiens 0 1417
ENST00000619224 RXRG-201 protein_coding Homo_sapiens 0 322

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