C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoid X receptor beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173554 Rxrb-004 ENSMUSG00000039656 10090 + 17:34032196-34034202 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastOvaryPlacentaTestisENSMUST00000173554
Transcript ID Adrenal Brain Breast Ovary Placenta Testis
ENSMUST00000173554 9.541±0.00 23.426±0.00 13.951±1.18 25.408±0.00 11.836±0.51 1.133±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001701 IGI in utero embryonic development
GO:0001893 IGI maternal placenta development
GO:0004886 IDA 9-cis retinoic acid receptor activity
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0042803 IDA protein homodimerization activity
GO:0043565 IGI sequence-specific DNA binding
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0048384 IDA retinoic acid receptor signaling pathway
GO:0055012 IGI ventricular cardiac muscle cell differentiation
GO:0060038 IGI cardiac muscle cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000100982 nr6a1a-201 protein_coding Danio_rerio 0.00000009 62
ENSDART00000130361 nr6a1a-202 protein_coding Danio_rerio 0.00000009 62
ENSDART00000006409 nr6a1a-001 protein_coding Danio_rerio 0.00000009 62
ENST00000374680 RXRB-001 protein_coding Homo_sapiens 0 665
ENST00000374685 RXRB-002 protein_coding Homo_sapiens 0 665
ENST00000383216 RXRB-002 protein_coding Homo_sapiens 0 665
ENST00000383217 RXRB-001 protein_coding Homo_sapiens 0 665
ENST00000415157 RXRB-001 protein_coding Homo_sapiens 0 665
ENST00000415909 RXRB-001 protein_coding Homo_sapiens 0 665
ENST00000431161 RXRB-002 protein_coding Homo_sapiens 0 665
ENST00000431820 RXRB-001 protein_coding Homo_sapiens 0 665
ENST00000436753 RXRB-001 protein_coding Homo_sapiens 0 665
ENST00000443603 RXRB-002 protein_coding Homo_sapiens 0 665
ENST00000455462 RXRB-002 protein_coding Homo_sapiens 0 665
ENST00000456244 RXRB-002 protein_coding Homo_sapiens 0 665
ENST00000462174 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 481
ENST00000463338 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 481
ENST00000465169 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 481
ENST00000467727 RXRB-003 retained_intron Homo_sapiens 0 484
ENST00000468440 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 481
ENST00000472425 RXRB-003 retained_intron Homo_sapiens 0 484
ENST00000481441 RXRB-003 retained_intron Homo_sapiens 0 484
ENST00000483281 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 481
ENST00000483648 RXRB-003 retained_intron Homo_sapiens 0 484
ENST00000485267 RXRB-004 nonsense_mediated_decay Homo_sapiens 0 481
ENST00000488725 RXRB-003 retained_intron Homo_sapiens 0 484
ENST00000494616 RXRB-003 retained_intron Homo_sapiens 0 484
ENST00000528918 RXRB-008 retained_intron Homo_sapiens 0 313
ENST00000531100 RXRB-007 protein_coding Homo_sapiens 0 315

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