C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: paired related homeobox 1b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000131637 prrx1b-002 ENSDARG00000042027 7955 + 20:34536738-34544216 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000131637
Transcript ID Brain Heart Kidney Muscle
ENSDART00000131637 0.127±0.08 0.342±0.19 0.282±0.00 0.302±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000284 CIL_000284_0001 CGP 20:34525760-34545649

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041659 Prrx2-002 protein_coding Mus_musculus 7e-31 139
ENSMUST00000113592 Prrx2-001 protein_coding Mus_musculus 5e-31 139
ENSMUST00000150299 Prrx2-003 retained_intron Mus_musculus 5e-23 111

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