C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: arginine-glutamic acid dipeptide (RE) repeats a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000142085 rerea-002 ENSDARG00000077353 7955 + 23:23079517-23133090 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003MK CIL_0003MK_0001 CGP 23:22950619-23222665

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0008270 IEA zinc ion binding
GO:0031063 IMP regulation of histone deacetylation
GO:0040036 IGI regulation of fibroblast growth factor receptor signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0048839 IMP inner ear development
GO:0051216 IMP cartilage development
GO:0060037 IGI pharyngeal system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105682 Rere-001 protein_coding Mus_musculus 0 337
ENST00000337907 RERE-001 protein_coding Homo_sapiens 0 337
ENST00000400907 RERE-015 protein_coding Homo_sapiens 0 279
ENST00000400908 RERE-014 protein_coding Homo_sapiens 0 337
ENST00000468247 RERE-009 protein_coding Homo_sapiens 0 230
ENST00000480342 RERE-010 retained_intron Homo_sapiens 0 337

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