C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: arginine-glutamic acid dipeptide (RE) repeats
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000400908 RERE-014 ENSG00000142599 9606 - 1:8354626-8817643 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartLiverLungMuscleOvaryTestisENST00000400908
Transcript ID Bladder Breast Colon Heart Liver Lung Muscle Ovary Testis
ENST00000400908 2.680±0.00 3.273±0.00 2.854±0.00 0.562±0.00 1.557±0.00 1.047±0.00 2.909±0.00 4.689±0.00 4.110±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VW CIL_0007VW_0001 VISTA 1:7770379-8371827

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 NAS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006607 TAS NLS-bearing protein import into nucleus
GO:0007275 IEA multicellular organismal development
GO:0008267 TAS poly-glutamine tract binding
GO:0008270 IEA zinc ion binding
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105682 Rere-001 protein_coding Mus_musculus 0 6322
ENSMUST00000105680 Rere-003 protein_coding Mus_musculus 0 4774
ENSMUST00000136646 Rere-007 protein_coding Mus_musculus 0 1066
ENSDART00000142085 rerea-002 protein_coding Danio_rerio 0 337
ENSMUST00000131600 Rere-008 protein_coding Mus_musculus 0 270

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