C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: arginine glutamic acid dipeptide (RE) repeats
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105682 Rere-001 ENSMUSG00000039852 10090 + 4:150281646-150621966 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105682
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105682 2.022±0.97 3.506±1.43 3.175±1.57 8.820±3.96 1.039±0.48 1.750±0.04 0.817±0.27 1.888±0.07 0.696±0.28 2.053±0.03 1.723±0.22 4.172±5.48 6.116±3.03 4.581±0.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003MK CIL_0003MK_0002 CGP 4:150236721-150621966

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 IPI histone deacetylase complex
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0006338 IPI chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0008270 IEA zinc ion binding
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000142085 rerea-002 protein_coding Danio_rerio 0 337
ENST00000337907 RERE-001 protein_coding Homo_sapiens 0 6517
ENST00000377464 RERE-002 protein_coding Homo_sapiens 0 5145
ENST00000400907 RERE-015 protein_coding Homo_sapiens 0 2189
ENST00000400908 RERE-014 protein_coding Homo_sapiens 0 6322
ENST00000464367 RERE-012 non_stop_decay Homo_sapiens 0 392
ENST00000464972 RERE-007 protein_coding Homo_sapiens 0 553
ENST00000468247 RERE-009 protein_coding Homo_sapiens 0 398
ENST00000469251 RERE-008 processed_transcript Homo_sapiens 0 442
ENST00000476556 RERE-003 protein_coding Homo_sapiens 0 4626
ENST00000480342 RERE-010 retained_intron Homo_sapiens 0 1893
ENST00000488215 RERE-013 protein_coding Homo_sapiens 0 676
ENST00000505225 RERE-018 protein_coding Homo_sapiens 0 359
ENST00000507012 RERE-017 processed_transcript Homo_sapiens 0 209
ENST00000514428 RERE-016 protein_coding Homo_sapiens 0 283

Loading