C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: jumonji, AT rich interactive domain 2b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000147627 jarid2b-001 ENSDARG00000062268 7955 + 19:26558289-26642196 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverENSDART00000147627
Transcript ID Liver
ENSDART00000147627 0.017±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001BY CIL_0001BY_0002 CGP 19:26457126-26720884

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 ISS chromatin binding
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007275 IEA multicellular organismal development
GO:0016568 IEA chromatin modification
GO:0030154 IEA cell differentiation
GO:0031061 ISS negative regulation of histone methylation
GO:0035097 ISS histone methyltransferase complex
GO:0035098 ISS ESC/E(Z) complex
GO:0045892 ISS negative regulation of transcription, DNA-dependent
GO:0048863 ISS stem cell differentiation
GO:0051574 ISS positive regulation of histone H3-K9 methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000044608 Jarid2-002 protein_coding Mus_musculus 0 676
ENSMUST00000173246 Jarid2-001 protein_coding Mus_musculus 0 676
ENSMUST00000173367 Jarid2-007 protein_coding Mus_musculus 0.00000001 66
ENSMUST00000173704 Jarid2-003 protein_coding Mus_musculus 0 676
ENSMUST00000173906 Jarid2-006 protein_coding Mus_musculus 0 536
ENSMUST00000174683 Jarid2-005 retained_intron Mus_musculus 1e-35 158
ENST00000341776 JARID2-001 protein_coding Homo_sapiens 0 706
ENST00000397311 JARID2-201 protein_coding Homo_sapiens 0 706
ENST00000474854 JARID2-002 processed_transcript Homo_sapiens 0 224

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