C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: jumonji, AT rich interactive domain 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397311 JARID2-201 ENSG00000008083 9606 + 6:15248855-15522040 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000397311
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000397311 1.252±0.00 1.742±0.00 0.667±0.12 0.725±0.00 1.441±0.00 1.653±0.00 0.925±0.00 1.351±0.00 1.421±0.00 1.051±0.50 0.831±0.30 7.332±4.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003I7 CIL_0003I7_0001 CGP 6:14117256-15522040
CIL_0008HW CIL_0008HW_0001 VISTA 6:15208612-15811107
CIL_0001BY CIL_0001BY_0003 CGP 6:15246296-15663058

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 ISS chromatin binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007417 TAS central nervous system development
GO:0016568 IEA chromatin modification
GO:0031061 ISS negative regulation of histone methylation
GO:0035097 ISS histone methyltransferase complex
GO:0035098 IDA ESC/E(Z) complex
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0048863 ISS stem cell differentiation
GO:0051574 ISS positive regulation of histone H3-K9 methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000173246 Jarid2-001 protein_coding Mus_musculus 0 4669
ENSMUST00000044608 Jarid2-002 protein_coding Mus_musculus 0 4669
ENSMUST00000173704 Jarid2-003 protein_coding Mus_musculus 0 4669
ENSMUST00000173906 Jarid2-006 protein_coding Mus_musculus 0 3910
ENSMUST00000174683 Jarid2-005 retained_intron Mus_musculus 0 3339
ENSMUST00000173367 Jarid2-007 protein_coding Mus_musculus 0 1666
ENSMUST00000174557 Jarid2-004 retained_intron Mus_musculus 0 852
ENSDART00000089836 jarid2b-201 protein_coding Danio_rerio 0 848
ENSMUST00000173003 Jarid2-008 nonsense_mediated_decay Mus_musculus 0 708
ENSDART00000147627 jarid2b-001 protein_coding Danio_rerio 0 706
ENSMUST00000172924 Jarid2-010 processed_transcript Mus_musculus 0 436
ENSDART00000086333 jarid2a-001 protein_coding Danio_rerio 0 424
ENSMUST00000172581 Jarid2-012 processed_transcript Mus_musculus 0 401
ENSMUST00000172977 Jarid2-014 nonsense_mediated_decay Mus_musculus 0 346
ENSMUST00000172708 Jarid2-016 processed_transcript Mus_musculus 0 313

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