C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: jumonji, AT rich interactive domain 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000341776 JARID2-001 ENSG00000008083 9606 + 6:15246296-15522021 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000341776
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000341776 1.322±0.00 0.857±0.00 0.270±0.00 2.108±1.39 1.935±0.37 1.881±0.00 1.078±0.40 0.286±0.00 1.074±0.90 2.139±0.00 1.173±0.00 1.169±0.58 2.805±1.12 4.683±1.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003I7 CIL_0003I7_0001 CGP 6:14117256-15522040
CIL_0008HW CIL_0008HW_0001 VISTA 6:15208612-15811107
CIL_0001BY CIL_0001BY_0003 CGP 6:15246296-15663058

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001889 IEA liver development
GO:0003677 IEA DNA binding
GO:0003682 ISS chromatin binding
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007417 TAS central nervous system development
GO:0008285 IEA negative regulation of cell proliferation
GO:0016568 IEA chromatin modification
GO:0031061 ISS negative regulation of histone methylation
GO:0035097 ISS histone methyltransferase complex
GO:0035098 IDA ESC/E(Z) complex
GO:0042127 IEA regulation of cell proliferation
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0048536 IEA spleen development
GO:0048538 IEA thymus development
GO:0048863 ISS stem cell differentiation
GO:0051574 ISS positive regulation of histone H3-K9 methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000173246 Jarid2-001 protein_coding Mus_musculus 0 5118
ENSMUST00000173704 Jarid2-003 protein_coding Mus_musculus 0 5044
ENSMUST00000044608 Jarid2-002 protein_coding Mus_musculus 0 5042
ENSMUST00000173906 Jarid2-006 protein_coding Mus_musculus 0 3910
ENSMUST00000174683 Jarid2-005 retained_intron Mus_musculus 0 3788
ENSMUST00000173367 Jarid2-007 protein_coding Mus_musculus 0 1666
ENSMUST00000174557 Jarid2-004 retained_intron Mus_musculus 0 1301
ENSDART00000089836 jarid2b-201 protein_coding Danio_rerio 0 848
ENSMUST00000173003 Jarid2-008 nonsense_mediated_decay Mus_musculus 0 708
ENSDART00000147627 jarid2b-001 protein_coding Danio_rerio 0 706
ENSMUST00000172977 Jarid2-014 nonsense_mediated_decay Mus_musculus 0 586
ENSMUST00000174068 Jarid2-011 protein_coding Mus_musculus 0 579
ENSMUST00000172830 Jarid2-015 protein_coding Mus_musculus 0 510
ENSMUST00000172924 Jarid2-010 processed_transcript Mus_musculus 0 436
ENSDART00000086333 jarid2a-001 protein_coding Danio_rerio 0 424
ENSMUST00000174086 Jarid2-013 protein_coding Mus_musculus 0 405
ENSMUST00000172581 Jarid2-012 processed_transcript Mus_musculus 0 390
ENSMUST00000172708 Jarid2-016 processed_transcript Mus_musculus 0 379

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