C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuronal calcium sensor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000000199 Ncs1-001 ENSMUSG00000062661 10090 + 2:31245823-31295989 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000199
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000199 3.217±1.72 1.845±0.37 3.098±0.21 27.337±6.08 1.150±0.36 2.052±0.12 2.329±0.61 1.458±0.33 0.177±0.15 1.150±0.25 1.311±0.20 4.708±1.75 0.624±0.41 3.084±1.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004XI CIL_0004XI_0002 CGP 2:31152316-31295989
CIL_000936 CIL_000936_0002 VISTA 2:31199311-31800827
CIL_0004XH CIL_0004XH_0002 CGP 2:31245823-31460738

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 IEA magnesium ion binding
GO:0005245 ISS voltage-gated calcium channel activity
GO:0005509 TAS calcium ion binding
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005829 IEA cytosol
GO:0005886 IEA plasma membrane
GO:0010975 ISS regulation of neuron projection development
GO:0019901 IEA protein kinase binding
GO:0030054 IEA cell junction
GO:0030424 IDA axon
GO:0030425 IDA dendrite
GO:0031045 IEA dense core granule
GO:0031410 IEA cytoplasmic vesicle
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0045211 IEA postsynaptic membrane
GO:0045921 IEA positive regulation of exocytosis
GO:0048015 IEA phosphatidylinositol-mediated signaling
GO:0050806 TAS positive regulation of synaptic transmission
GO:0070062 IEA extracellular vesicular exosome
GO:0070588 ISS calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000061786 ncs1b-001 protein_coding Danio_rerio 0 527
ENST00000372398 NCS1-001 protein_coding Homo_sapiens 0 1085

Loading