C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0004XH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000107130-ENSG00000148357 CGP 9606 9:130172578-130434123
GeneTranscriptPositionBiotype
ENSG00000107130 (NCS1)
neuronal calcium sensor 1
ENST00000372398 (NCS1-001) 130172578-130237304 protein_coding
ENST00000493042 (NCS1-002) 130193828-130217920 processed_transcript
ENSG00000148357 (HMCN2)
hemicentin 2
ENST00000428715 (HMCN2-004) 130425716-130431438 protein_coding
ENST00000480829 (HMCN2-002) 130398642-130407252 retained_intron
ENST00000487727 (HMCN2-003) 130384449-130419582 nonsense_mediated_decay
ENST00000611173 (HMCN2-201) 130307519-130338606 protein_coding
ENST00000623487 (HMCN2-005) 130429166-130434121 retained_intron
ENST00000624552 (HMCN2-001) 130265882-130434123 protein_coding
ENSG00000264169 (RN7SL665P)
RNA, 7SL, cytoplasmic 665, pseudogene
ENST00000578793 (RN7SL665P-201) 130400266-130400565 misc_RNA
CIL_0004XH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000062661-ENSMUSG00000055632 CGP 10090 2:31245823-31460738
GeneTranscriptPositionBiotype
ENSMUSG00000055632 (Hmcn2)
hemicentin 2
ENSMUST00000113532 (Hmcn2-001) 31314415-31460738 protein_coding
ENSMUST00000130375 (Hmcn2-002) 31400277-31405814 protein_coding
ENSMUST00000138821 (Hmcn2-003) 31438062-31460724 retained_intron
ENSMUST00000141294 (Hmcn2-005) 31454708-31457989 retained_intron
ENSMUST00000142448 (Hmcn2-004) 31446735-31460737 processed_transcript
ENSMUSG00000062661 (Ncs1)
neuronal calcium sensor 1
ENSMUST00000000199 (Ncs1-001) 31245823-31295989 protein_coding
ENSMUST00000150670 (Ncs1-002) 31246166-31292319 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004XH_0001ENSG00000107130ENST00000372398ENST00000493042ENSG00000148357ENST00000428715ENST00000480829ENST00000487727ENST00000611173ENST00000623487ENST00000624552ENSG00000264169ENST00000578793CIL_0004XH_0002ENSMUSG00000055632ENSMUST00000113532ENSMUST00000130375ENSMUST00000138821ENSMUST00000141294ENSMUST00000142448ENSMUSG00000062661ENSMUST00000000199ENSMUST00000150670
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004XH_0001ENSG00000107130ENST00000372398ENSG00000148357ENST00000428715ENST00000480829ENST00000487727ENST00000611173ENST00000623487ENST00000624552ENSG00000264169ENST00000578793CIL_0004XH_0002ENSMUSG00000055632ENSMUST00000113532ENSMUST00000138821ENSMUST00000142448ENSMUSG00000062661ENSMUST00000000199ENSMUST00000150670
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000107130 ENST00000372398 2.716±0.00 11.182±0.00 1.495±0.00 66.634±40.12 3.283±0.15 20.776±19.86 0.831±0.66 8.258±8.04 5.847±4.90 3.358±3.17 0.919±0.77 6.018±6.75 1.237±0.35 6.514±4.70
ENST00000493042 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000148357 ENST00000428715 N/A N/A N/A 0.212±0.00 2.951±0.00 5.498±0.00 N/A 1.135±0.00 0.358±0.00 N/A N/A N/A N/A 12.553±0.00
ENST00000480829 N/A N/A N/A 0.037±0.02 N/A N/A N/A N/A N/A 1.162±0.00 N/A 0.165±0.00 0.063±0.00 N/A
ENST00000487727 0.460±0.00 N/A 0.028±0.00 0.020±0.00 N/A N/A N/A 0.226±0.00 N/A N/A N/A 0.582±0.14 N/A N/A
ENST00000611173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.117±0.00 N/A N/A
ENST00000623487 N/A N/A N/A N/A N/A N/A N/A 0.152±0.00 0.089±0.00 N/A N/A 0.292±0.00 N/A N/A
ENST00000624552 0.544±0.00 1.764±0.00 0.066±0.00 N/A 0.330±0.09 1.403±0.00 0.154±0.00 0.053±0.00 0.035±0.00 N/A 1.024±0.26 0.234±0.17 0.088±0.00 2.909±0.00
ENSG00000264169 ENST00000578793 0.129±0.00 N/A N/A 0.229±0.00 0.435±0.00 0.260±0.00 N/A N/A N/A 0.137±0.00 0.062±0.00 N/A N/A 0.126±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000055632 ENSMUST00000113532 7.137±3.67 0.383±0.14 2.531±0.00 0.042±0.01 1.251±0.55 11.480±4.54 1.389±0.38 0.152±0.01 N/A 0.653±0.05 0.832±0.54 3.090±1.62 0.095±0.06 0.347±0.13
ENSMUST00000130375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138821 N/A N/A N/A N/A N/A N/A N/A 2.855±0.73 N/A N/A 4.284±0.96 3.711±0.00 1.294±0.36 N/A
ENSMUST00000141294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142448 27.067±18.90 0.594±0.07 16.659±2.30 N/A 10.490±6.82 44.681±11.46 4.385±1.26 1.849±0.29 0.154±0.10 3.384±0.05 3.416±0.00 13.093±3.95 1.880±0.99 0.797±0.08
ENSMUSG00000062661 ENSMUST00000000199 3.217±1.72 1.845±0.37 3.098±0.21 27.337±6.08 1.150±0.36 2.052±0.12 2.329±0.61 1.458±0.33 0.177±0.15 1.150±0.25 1.311±0.20 4.708±1.75 0.624±0.41 3.084±1.19
ENSMUST00000150670 N/A N/A N/A 142.163±0.00 N/A N/A N/A N/A 0.086±0.00 N/A N/A 7.066±0.00 3.201±0.00 7.015±0.00

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