C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: HD domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000000304 Hddc2-001 ENSMUSG00000000295 10090 + 10:31313382-31328204 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000304
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000304 9.501±3.48 1.914±0.78 7.421±0.15 7.471±2.18 4.077±1.44 3.632±0.74 1.310±0.29 5.134±0.81 4.115±4.01 3.095±1.08 7.650±1.11 21.557±10.87 6.664±2.01 2.646±0.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008OH CIL_0008OH_0002 VISTA 10:30727819-31328728
CIL_0008OI CIL_0008OI_0002 VISTA 10:30734051-31335579
CIL_0008OD CIL_0008OD_0002 VISTA 10:30753081-31354088
CIL_0008OC CIL_0008OC_0002 VISTA 10:30928891-31529864
CIL_0008OJ CIL_0008OJ_0002 VISTA 10:30972653-31573675
CIL_000666 CIL_000666_0002 CGP 10:31313382-31445921

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005739 IDA mitochondrion
GO:0008150 ND biological_process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318787 HDDC2-001 nonsense_mediated_decay Homo_sapiens 0 326
ENST00000398153 HDDC2-002 protein_coding Homo_sapiens 0 651
ENST00000608284 HDDC2-005 protein_coding Homo_sapiens 0 327
ENST00000608295 HDDC2-004 protein_coding Homo_sapiens 0 484
ENST00000608461 HDDC2-007 retained_intron Homo_sapiens 5.04467e-44 182
ENST00000609021 HDDC2-003 retained_intron Homo_sapiens 0.00000000000002 86
ENST00000609477 HDDC2-009 nonsense_mediated_decay Homo_sapiens 4.06377e-44 182
ENST00000609574 HDDC2-006 processed_transcript Homo_sapiens 5.04467e-44 182

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