C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: radixin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000000590 Rdx-201 ENSMUSG00000032050 10090 + 9:52047941-52088737 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000590
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000590 3.202±1.21 5.463±0.00 5.674±0.93 2.916±0.66 1.088±0.19 2.278±0.58 6.467±0.51 4.552±1.74 7.436±1.99 25.540±3.40 5.749±1.49 20.937±21.99 7.484±2.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DH CIL_0008DH_0002 VISTA 9:51847924-52450392

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001726 IDA ruffle
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005615 IEA extracellular space
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0005902 IDA microvillus
GO:0005925 IEA focal adhesion
GO:0010628 IEA positive regulation of gene expression
GO:0019898 IEA extrinsic component of membrane
GO:0030027 IDA lamellipodium
GO:0030033 IMP microvillus assembly
GO:0030175 IDA filopodium
GO:0030315 IEA T-tubule
GO:0032420 IDA stereocilium
GO:0044822 IEA poly(A) RNA binding
GO:0045176 IMP apical protein localization
GO:0045177 IDA apical part of cell
GO:0051286 IEA cell tip
GO:0051693 IEA actin filament capping
GO:0061028 IEA establishment of endothelial barrier
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000343115 RDX-001 protein_coding Homo_sapiens 0 2639
ENST00000367074 GS1-309P15.4-001 processed_pseudogene Homo_sapiens 0 1786
ENST00000405097 RDX-002 protein_coding Homo_sapiens 0 2412
ENST00000527537 RDX-009 retained_intron Homo_sapiens 0 804
ENST00000528172 RP11-23F23.3-001 processed_pseudogene Homo_sapiens 0 1764
ENST00000528498 RDX-006 protein_coding Homo_sapiens 0 2412
ENST00000528556 RDX-013 nonsense_mediated_decay Homo_sapiens 0 697
ENST00000528900 RDX-003 protein_coding Homo_sapiens 0 904
ENST00000529774 RDX-015 retained_intron Homo_sapiens 0 669
ENST00000530085 RDX-016 protein_coding Homo_sapiens 0 756
ENST00000530131 RDX-007 nonsense_mediated_decay Homo_sapiens 0 1764
ENST00000530301 RDX-004 protein_coding Homo_sapiens 0 473
ENST00000530749 RDX-005 nonsense_mediated_decay Homo_sapiens 0 2412
ENST00000532118 RDX-014 protein_coding Homo_sapiens 0 712
ENST00000532461 RDX-008 retained_intron Homo_sapiens 0 959
ENST00000533678 RDX-011 nonsense_mediated_decay Homo_sapiens 0 267
ENST00000533961 RDX-017 retained_intron Homo_sapiens 0 619
ENST00000533991 RDX-010 protein_coding Homo_sapiens 0 580
ENST00000534683 RDX-012 protein_coding Homo_sapiens 0 492
ENST00000544551 RDX-201 protein_coding Homo_sapiens 0 1797

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