C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GM2 ganglioside activator protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000000608 Gm2a-001 ENSMUSG00000000594 10090 + 11:55098115-55113029 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000608
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000608 70.846±13.89 150.543±9.62 25.299±2.43 4.390±1.27 77.621±26.14 23.382±1.30 7.664±2.12 114.502±12.81 28.097±21.71 42.008±2.24 2.330±0.44 228.772±68.78 104.912±29.32 34.061±25.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024Q CIL_00024Q_0002 CGP 11:55049731-55113029
CIL_0001KO CIL_0001KO_0002 CGP 11:55098115-55151708

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001573 IEA ganglioside metabolic process
GO:0004563 IMP beta-N-acetylhexosaminidase activity
GO:0005319 IEA lipid transporter activity
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005764 IEA lysosome
GO:0005889 IEA hydrogen:potassium-exchanging ATPase complex
GO:0006689 IMP ganglioside catabolic process
GO:0006869 IEA lipid transport
GO:0007611 IMP learning or memory
GO:0008047 IDA enzyme activator activity
GO:0009313 IMP oligosaccharide catabolic process
GO:0009898 IEA cytoplasmic side of plasma membrane
GO:0016004 IEA phospholipase activator activity
GO:0019915 IMP lipid storage
GO:0032428 IEA beta-N-acetylgalactosaminidase activity
GO:0045179 IEA apical cortex
GO:0050877 IMP neurological system process
GO:0050885 IMP neuromuscular process controlling balance
GO:0051345 IEA positive regulation of hydrolase activity
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000370474 C6orf57-001 protein_coding Homo_sapiens 0.0000005 60
ENST00000393822 SFTPB-201 protein_coding Homo_sapiens 0.00002 57
ENST00000409383 SFTPB-003 protein_coding Homo_sapiens 0.000009 57
ENST00000428225 SFTPB-002 protein_coding Homo_sapiens 0.000009 57
ENST00000519937 SFTPB-001 protein_coding Homo_sapiens 0.00002 57
ENST00000566574 DDX19A-008 retained_intron Homo_sapiens 0.0003 53
ENST00000609438 GPRIN3-001 protein_coding Homo_sapiens 0.000006 60

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