C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: seizure related gene 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000000646 Sez6-009 ENSMUSG00000000632 10090 + 11:77931012-77979040 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonKidneyLungMuscleOvaryPlacentaENSMUST00000000646
Transcript ID Bladder Brain Colon Kidney Lung Muscle Ovary Placenta
ENSMUST00000000646 0.011±0.00 14.927±2.68 0.060±0.02 0.028±0.02 0.014±0.00 0.107±0.01 0.351±0.25 0.010±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076L CIL_00076L_0003 CGP 11:77880615-77979048
CIL_0006M6 CIL_0006M6_0002 CGP 11:77930800-78030539

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005615 IDA extracellular space
GO:0005783 IDA endoplasmic reticulum
GO:0005886 IEA plasma membrane
GO:0008344 IGI adult locomotory behavior
GO:0016021 IEA integral component of membrane
GO:0021680 IGI cerebellar Purkinje cell layer development
GO:0030054 IEA cell junction
GO:0043025 IDA neuronal cell body
GO:0043197 IDA dendritic spine
GO:0043198 IDA dendritic shaft
GO:0045202 IEA synapse
GO:0048471 IDA perinuclear region of cytoplasm
GO:0050773 IMP regulation of dendrite development
GO:0060074 IGI synapse maturation
GO:0060079 IMP regulation of excitatory postsynaptic membrane potential
GO:0090036 IGI regulation of protein kinase C signaling
GO:0097440 IDA apical dendrite
GO:1900006 IDA positive regulation of dendrite development
GO:2000171 IDA negative regulation of dendrite development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000317338 SEZ6-002 protein_coding Homo_sapiens 0 3467
ENST00000335960 SEZ6-201 protein_coding Homo_sapiens 0 3434
ENST00000360295 SEZ6-001 protein_coding Homo_sapiens 0 3541
ENST00000442608 SEZ6-012 protein_coding Homo_sapiens 0 3576
ENST00000539265 SEZ6-013 protein_coding Homo_sapiens 0 444
ENST00000540419 SEZ6-006 nonsense_mediated_decay Homo_sapiens 0 1788
ENST00000540632 SEZ6-003 protein_coding Homo_sapiens 0 3260
ENST00000544224 SEZ6-011 retained_intron Homo_sapiens 0 508

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