C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NOL1/NOP2/Sun domain family, member 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000000940 Nsun5-001 ENSMUSG00000000916 10090 + 5:135369953-135376798 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000000940
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000000940 5.129±0.46 9.518±0.58 3.568±0.32 6.696±0.00 6.773±0.96 6.414±0.47 4.433±0.19 4.047±1.19 4.795±1.68 6.145±0.85 1.716±0.13 10.772±1.80 4.243±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005UT CIL_0005UT_0002 CGP 5:135353295-135376805
CIL_0005SR CIL_0005SR_0002 CGP 5:135369953-135394546

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0006364 IEA rRNA processing
GO:0008150 ND biological_process
GO:0008168 IEA methyltransferase activity
GO:0032259 IEA methylation
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000252594 NSUN5-002 protein_coding Homo_sapiens 0 1238
ENST00000310326 NSUN5-004 protein_coding Homo_sapiens 0 1238
ENST00000358357 POM121-002 protein_coding Homo_sapiens 0 241
ENST00000428206 NSUN5-005 protein_coding Homo_sapiens 0 845
ENST00000438747 NSUN5-001 protein_coding Homo_sapiens 0 1258
ENST00000471461 NSUN5-003 retained_intron Homo_sapiens 0 985
ENST00000602348 NSUN5P2-010 processed_transcript Homo_sapiens 0 241
ENST00000614583 POM121C-004 retained_intron Homo_sapiens 0 246
ENST00000615331 POM121C-001 protein_coding Homo_sapiens 0 246

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