C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histidyl-tRNA synthetase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001416 Hars-201 ENSMUSG00000001380 10090 - 18:36766530-36783205 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001416
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001416 16.709±2.13 11.846±1.01 21.850±0.08 37.906±17.64 10.780±4.77 8.696±1.34 9.990±0.53 13.541±1.47 29.932±23.46 14.204±1.52 11.345±0.49 20.071±9.58 38.634±16.18 8.814±1.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006ZJ CIL_0006ZJ_0002 CGP 18:36763671-36783205
CIL_0006ZR CIL_0006ZR_0002 CGP 18:36766530-36792562

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0004821 IEA histidine-tRNA ligase activity
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0006427 IEA histidyl-tRNA aminoacylation
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000230771 HARS2-001 protein_coding Homo_sapiens 0 870
ENST00000307633 HARS-008 protein_coding Homo_sapiens 0 1267
ENST00000415192 HARS-011 protein_coding Homo_sapiens 0 1256
ENST00000431330 HARS-005 protein_coding Homo_sapiens 0 1267
ENST00000438307 HARS-012 protein_coding Homo_sapiens 0 1544
ENST00000457527 HARS-009 protein_coding Homo_sapiens 0 1267
ENST00000504156 HARS-001 protein_coding Homo_sapiens 0 1881
ENST00000504366 HARS-003 protein_coding Homo_sapiens 0 1687
ENST00000506579 HARS-002 retained_intron Homo_sapiens 0 671
ENST00000507746 HARS-006 protein_coding Homo_sapiens 0 673
ENST00000508522 HARS2-003 protein_coding Homo_sapiens 0 861
ENST00000509087 HARS-016 retained_intron Homo_sapiens 0 457
ENST00000510104 HARS2-002 nonsense_mediated_decay Homo_sapiens 9e-25 119
ENST00000513688 HARS2-011 retained_intron Homo_sapiens 0 285

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