C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histidyl-tRNA synthetase 2, mitochondrial
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000230771 HARS2-001 ENSG00000112855 9606 + 5:140691426-140699291 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000230771
Transcript ID Adrenal Bladder Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000230771 21.714±0.00 4.261±0.00 4.882±0.00 5.238±3.00 18.666±0.00 3.104±0.00 2.798±0.00 6.446±2.00 13.807±6.50 17.595±9.93 17.545±5.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006ZJ CIL_0006ZJ_0001 CGP 5:140670794-140692024
CIL_0006ZR CIL_0006ZR_0001 CGP 5:140673173-140699291
CIL_0006ZQ CIL_0006ZQ_0001 CGP 5:140691426-140706676

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0004812 IEA aminoacyl-tRNA ligase activity
GO:0004821 NAS:IEA histidine-tRNA ligase activity
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005759 TAS mitochondrial matrix
GO:0006412 NAS translation
GO:0006418 TAS:IEA tRNA aminoacylation for protein translation
GO:0006427 IEA histidyl-tRNA aminoacylation
GO:0010467 TAS gene expression
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000152954 Hars2-001 protein_coding Mus_musculus 0 1644
ENSMUST00000019287 Hars2-002 protein_coding Mus_musculus 0 972
ENSMUST00000001416 Hars-201 protein_coding Mus_musculus 0 870
ENSMUST00000124204 Hars2-007 retained_intron Mus_musculus 0 470
ENSMUST00000117660 Gm14890-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000131952 Hars2-005 retained_intron Mus_musculus 0 414

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