C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: general transcription factor IIF, polypeptide 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000002733 Gtf2f1-201 ENSMUSG00000002658 10090 - 17:57003405-57011288 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000002733
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000002733 14.063±2.64 18.640±2.04 18.840±0.64 34.844±14.06 13.575±3.86 22.907±1.77 5.949±1.14 11.964±1.80 21.892±17.02 12.914±2.66 7.688±0.53 27.480±9.24 39.707±16.11 123.436±52.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WG CIL_0003WG_0002 CGP 17:56999457-57011288
CIL_0003WB CIL_0003WB_0002 CGP 17:57003405-57031507

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003824 IEA catalytic activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006367 IEA transcription initiation from RNA polymerase II promoter
GO:0008134 IEA transcription factor binding
GO:0009615 IEA response to virus
GO:0019211 IEA phosphatase activator activity
GO:0030054 IEA cell junction
GO:0032968 IEA positive regulation of transcription elongation from RNA polymerase II promoter
GO:0043085 IEA positive regulation of catalytic activity
GO:0044822 IEA poly(A) RNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000394456 GTF2F1-001 protein_coding Homo_sapiens 0 1384
ENST00000593678 GTF2F1-006 protein_coding Homo_sapiens 0 856
ENST00000594213 GTF2F1-008 retained_intron Homo_sapiens 0 414
ENST00000594965 GTF2F1-007 retained_intron Homo_sapiens 5e-30 135
ENST00000595047 GTF2F1-005 protein_coding Homo_sapiens 0 963

Loading