C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: general transcription factor IIF, polypeptide 1, 74kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394456 GTF2F1-001 ENSG00000125651 9606 - 19:6379569-6393460 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000394456
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000394456 6.674±0.00 9.912±0.00 0.314±0.00 6.804±4.98 2.965±2.32 15.088±0.00 2.354±1.63 15.828±0.00 7.614±0.00 8.050±0.00 8.124±0.00 21.055±20.56 19.682±7.06 21.584±4.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WG CIL_0003WG_0001 CGP 19:6375148-6393981
CIL_0003WB CIL_0003WB_0001 CGP 19:6379569-6424794

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003677 IEA DNA binding
GO:0003713 TAS transcription coactivator activity
GO:0003824 IEA catalytic activity
GO:0005515 IPI protein binding
GO:0005634 IEA:IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005674 TAS transcription factor TFIIF complex
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006367 IEA:TAS transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006370 TAS 7-methylguanosine mRNA capping
GO:0008134 IPI transcription factor binding
GO:0008380 TAS RNA splicing
GO:0009615 IEP response to virus
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0019211 IDA phosphatase activator activity
GO:0030054 IDA cell junction
GO:0032968 IEA positive regulation of transcription elongation from RNA polymerase II promoter
GO:0043085 IDA positive regulation of catalytic activity
GO:0044822 IDA poly(A) RNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0050434 TAS positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000002733 Gtf2f1-201 protein_coding Mus_musculus 0 1384

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