C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hepatoma-derived growth factor, related protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000002911 Hdgfrp2-201 ENSMUSG00000002833 10090 + 17:56079657-56100596 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000002911
Transcript ID Adrenal Bladder Brain Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000002911 51.011±7.49 21.886±0.24 47.183±21.10 6.907±1.10 11.109±1.24 13.752±2.09 12.071±6.30 10.946±0.00 59.725±27.55 40.462±29.74 60.529±15.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002Z9 CIL_0002Z9_0002 CGP 17:56067045-56100596
CIL_0002YS CIL_0002YS_0002 CGP 17:56079657-56109803

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299633 HDGFRP3-001 protein_coding Homo_sapiens 6e-35 156
ENST00000563404 HDGFRP3-005 nonsense_mediated_decay Homo_sapiens 0.00000000000004 82
ENST00000563790 HDGFRP3-004 nonsense_mediated_decay Homo_sapiens 0.00000000000008 82
ENST00000568129 HDGFRP3-002 retained_intron Homo_sapiens 6e-27 124
ENST00000589486 HDGFRP2-010 protein_coding Homo_sapiens 0 614
ENST00000592691 HDGFRP2-009 protein_coding Homo_sapiens 0 377
ENST00000601353 HDGFRP2-011 nonsense_mediated_decay Homo_sapiens 0 641
ENST00000615225 HDGFRP2-003 nonsense_mediated_decay Homo_sapiens 0 769
ENST00000616600 HDGFRP2-001 protein_coding Homo_sapiens 0 1430
ENST00000621835 HDGFRP2-002 protein_coding Homo_sapiens 0 1424

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