C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thromboxane A synthase 1, platelet
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000003017 Tbxas1-001 ENSMUSG00000029925 10090 + 6:38918980-39084585 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003017
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003017 3.568±0.63 2.485±0.29 1.512±0.05 0.374±0.26 4.112±0.37 1.068±0.37 0.580±0.11 2.763±0.00 2.458±2.17 3.549±0.69 0.221±0.08 2.216±0.60 0.457±0.25 0.123±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030C CIL_00030C_0002 CGP 6:38663069-38876165
CIL_00023M CIL_00023M_0003 CGP 6:38694390-39084585
CIL_000309 CIL_000309_0003 CGP 6:38875404-39118349

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001516 IEA prostaglandin biosynthetic process
GO:0004497 IEA monooxygenase activity
GO:0004796 IMP thromboxane-A synthase activity
GO:0005506 IEA iron ion binding
GO:0005783 IEA endoplasmic reticulum
GO:0016021 IEA integral component of membrane
GO:0016705 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 IEA heme binding
GO:0030644 IEA cellular chloride ion homeostasis
GO:0045907 IEA positive regulation of vasoconstriction
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263552 TBXAS1-201 protein_coding Homo_sapiens 0 1517
ENST00000336425 TBXAS1-001 protein_coding Homo_sapiens 0 1517
ENST00000411653 TBXAS1-005 protein_coding Homo_sapiens 0 1301
ENST00000414041 TBXAS1-013 nonsense_mediated_decay Homo_sapiens 0 272
ENST00000414508 TBXAS1-202 protein_coding Homo_sapiens 0 1301
ENST00000416849 TBXAS1-203 protein_coding Homo_sapiens 0 1016
ENST00000422328 TBXAS1-006 nonsense_mediated_decay Homo_sapiens 0 1245
ENST00000425687 TBXAS1-002 protein_coding Homo_sapiens 0 1408
ENST00000438104 TBXAS1-011 protein_coding Homo_sapiens 0 507
ENST00000448866 TBXAS1-003 protein_coding Homo_sapiens 0 1517
ENST00000455353 TBXAS1-008 protein_coding Homo_sapiens 0 409
ENST00000458722 TBXAS1-004 protein_coding Homo_sapiens 0 1016
ENST00000462275 TBXAS1-007 processed_transcript Homo_sapiens 0 1031
ENST00000469630 TBXAS1-015 retained_intron Homo_sapiens 0 497
ENST00000476637 TBXAS1-014 retained_intron Homo_sapiens 0 274
ENST00000492560 TBXAS1-012 retained_intron Homo_sapiens 0 278

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