C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00023M_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000042518-ENSDARG00000002249 CGP 7955 18:11910098-12321906
GeneTranscriptPositionBiotype
ENSDARG00000002249 (tbxas1)
thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A) 		ENSDART00000047555 (tbxas1-201) 12104314-12321906 protein_coding
ENSDART00000109497 (tbxas1-202) 12107697-12282878 protein_coding
ENSDART00000144246 (tbxas1-001) 12104319-12282876 protein_coding
ENSDARG00000007461 (srgap1)
SLIT-ROBO Rho GTPase activating protein 1 		ENSDART00000088908 (srgap1-201) 12311302-12505454 protein_coding
ENSDART00000140403 (srgap1-001) 12315953-12406004 protein_coding
ENSDARG00000042496 (parp12a)
poly (ADP-ribose) polymerase family, member 12a 		ENSDART00000130343 (parp12a-001) 12287679-12306569 protein_coding
ENSDARG00000042518 (hipk2)
homeodomain interacting protein kinase 2 		ENSDART00000062343 (hipk2-201) 11910098-12102227 protein_coding
ENSDART00000090335 (hipk2-001) 11913014-12061252 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00023M_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000064393-ENSG00000059377 CGP 9606 7:139561570-140020325
GeneTranscriptPositionBiotype
ENSG00000064393 (HIPK2)
homeodomain interacting protein kinase 2 		ENST00000342645 (HIPK2-201) 139583524-139717013 protein_coding
ENST00000406875 (HIPK2-001) 139561570-139777718 protein_coding
ENST00000428878 (HIPK2-002) 139572629-139777778 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_00023M_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000061436-ENSMUSG00000029925 CGP 10090 6:38694390-39084585
GeneTranscriptPositionBiotype
ENSMUSG00000029925 (Tbxas1)
thromboxane A synthase 1, platelet 		ENSMUST00000003017 (Tbxas1-001) 38918980-39084585 protein_coding
ENSMUST00000159226 (Tbxas1-004) 38919005-39029153 retained_intron
ENSMUST00000160963 (Tbxas1-006) 38941401-39001363 protein_coding
ENSMUST00000161360 (Tbxas1-005) 38983310-39073206 retained_intron
ENSMUST00000161781 (Tbxas1-002) 38919024-39084585 retained_intron
ENSMUST00000162521 (Tbxas1-003) 38875404-38952973 protein_coding
ENSMUST00000162656 (Tbxas1-007) 38971865-38983526 processed_transcript
ENSMUSG00000061436 (Hipk2)
homeodomain interacting protein kinase 2 		ENSMUST00000114855 (Hipk2-005) 38817907-38837311 retained_intron
ENSMUST00000159307 (Hipk2-006) 38736699-38743260 processed_transcript
ENSMUST00000159894 (Hipk2-007) 38745457-38818346 retained_intron
ENSMUST00000160360 (Hipk2-002) 38697889-38875971 protein_coding
ENSMUST00000160962 (Hipk2-001) 38697880-38837224 protein_coding
ENSMUST00000161779 (Hipk2-004) 38694390-38876165 protein_coding
ENSMUST00000162359 (Hipk2-003) 38697884-38875923 protein_coding
ENSMUSG00000100121 (RP23-346B17.3)
RIKEN cDNA 1700025N23 gene 		ENSMUST00000186189 (RP23-346B17.3-001) 39063878-39067598 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00023M_0001ENSDARG00000002249ENSDART00000047555ENSDART00000109497ENSDART00000144246ENSDARG00000007461ENSDART00000088908ENSDART00000140403ENSDARG00000042496ENSDART00000130343ENSDARG00000042518ENSDART00000062343ENSDART00000090335CIL_00023M_0002ENSG00000064393ENST00000342645ENST00000406875ENST00000428878CIL_00023M_0003ENSMUSG00000029925ENSMUST00000003017ENSMUST00000159226ENSMUST00000160963ENSMUST00000161360ENSMUST00000161781ENSMUST00000162521ENSMUST00000162656ENSMUSG00000061436ENSMUST00000114855ENSMUST00000159307ENSMUST00000159894ENSMUST00000160360ENSMUST00000160962ENSMUST00000161779ENSMUST00000162359ENSMUSG00000100121ENSMUST00000186189
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00023M_0001ENSDARG00000002249ENSDART00000047555ENSDART00000109497ENSDART00000144246ENSDARG00000007461ENSDART00000088908ENSDART00000140403ENSDARG00000042496ENSDART00000130343ENSDARG00000042518ENSDART00000062343ENSDART00000090335CIL_00023M_0002ENSG00000064393ENST00000342645ENST00000406875ENST00000428878CIL_00023M_0003ENSMUSG00000029925ENSMUST00000003017ENSMUST00000159226ENSMUST00000161360ENSMUST00000161781ENSMUST00000162521ENSMUSG00000061436ENSMUST00000114855ENSMUST00000160360ENSMUST00000160962ENSMUST00000161779ENSMUST00000162359ENSMUSG00000100121ENSMUST00000186189
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000002249 ENSDART00000047555 N/A N/A N/A 4.954±0.36 N/A N/A 9.859±0.68 4.948±0.00 3.125±0.00 N/A 4.372±0.00 N/A N/A N/A
ENSDART00000109497 N/A N/A N/A 3.037±1.18 N/A N/A 59.506±0.00 2.383±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000144246 N/A N/A N/A 6.505±3.13 N/A N/A 25.345±12.91 14.393±7.33 N/A N/A N/A N/A N/A N/A
ENSDARG00000007461 ENSDART00000088908 N/A N/A N/A 4.943±1.53 N/A N/A 1.825±0.77 0.512±0.27 N/A N/A 0.842±0.00 N/A N/A N/A
ENSDART00000140403 N/A N/A N/A N/A N/A N/A 0.635±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000042496 ENSDART00000130343 N/A N/A N/A 1.617±0.32 N/A N/A 3.300±1.28 4.623±0.00 0.366±0.00 N/A 1.507±0.00 N/A N/A N/A
ENSDARG00000042518 ENSDART00000062343 N/A N/A N/A N/A N/A N/A 3.865±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000090335 N/A N/A N/A N/A N/A N/A N/A N/A 0.371±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000064393 ENST00000342645 N/A N/A N/A N/A 3.022±0.00 2.363±0.00 3.419±0.00 N/A N/A 4.040±0.00 4.511±0.00 4.444±0.00 N/A N/A
ENST00000406875 23.882±0.00 N/A 8.346±0.00 3.187±0.00 5.174±2.75 1.451±0.53 6.080±4.34 2.660±0.11 1.452±0.87 2.697±2.10 2.983±0.53 1.602±1.40 2.474±0.36 1.241±0.96
ENST00000428878 N/A N/A 4.782±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029925 ENSMUST00000003017 3.568±0.63 2.485±0.29 1.512±0.05 0.374±0.26 4.112±0.37 1.068±0.37 0.580±0.11 2.763±0.00 2.458±2.17 3.549±0.69 0.221±0.08 2.216±0.60 0.457±0.25 0.123±0.08
ENSMUST00000159226 N/A N/A N/A N/A N/A N/A N/A N/A 0.124±0.04 N/A N/A N/A N/A 0.069±0.03
ENSMUST00000160963 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161360 N/A 0.325±0.00 N/A 0.058±0.00 N/A 0.266±0.00 0.110±0.00 N/A 0.049±0.00 N/A 0.045±0.01 N/A N/A 0.032±0.00
ENSMUST00000161781 0.880±0.26 0.447±0.08 0.534±0.23 0.081±0.00 0.921±0.21 0.339±0.15 0.175±0.05 1.158±0.11 0.444±0.47 0.637±0.14 0.064±0.02 0.333±0.10 0.061±0.03 0.034±0.03
ENSMUST00000162521 N/A N/A N/A N/A N/A N/A N/A N/A 0.224±0.00 N/A N/A N/A N/A N/A
ENSMUST00000162656 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000061436 ENSMUST00000114855 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.863±0.00 12.510±5.00
ENSMUST00000159307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160360 3.288±0.00 11.145±2.53 N/A N/A 5.669±0.98 2.641±0.28 N/A 5.093±1.11 3.473±0.73 7.653±1.70 N/A 6.399±2.13 N/A 1.820±0.00
ENSMUST00000160962 N/A N/A N/A N/A N/A 1.781±0.00 N/A N/A 3.286±0.00 N/A N/A 6.768±1.33 N/A N/A
ENSMUST00000161779 2.771±0.33 22.058±3.53 N/A 5.807±2.89 13.737±5.53 4.657±1.57 2.177±0.00 4.884±1.82 2.412±0.95 12.360±6.73 N/A 12.383±2.95 0.778±0.00 1.756±0.18
ENSMUST00000162359 N/A 11.442±3.12 N/A N/A 7.402±0.61 2.531±0.95 N/A N/A 2.764±0.39 N/A N/A 6.711±2.18 0.721±0.00 1.226±0.29
ENSMUSG00000100121 ENSMUST00000186189 0.237±0.07 0.114±0.01 0.023±0.00 0.071±0.09 0.198±0.14 0.337±0.20 0.098±0.02 0.182±0.10 0.057±0.03 0.095±0.04 0.044±0.01 0.149±0.08 0.046±0.02 6.011±5.77

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