C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thromboxane A synthase 1 (platelet)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000448866 TBXAS1-003 ENSG00000059377 9606 + 7:139829224-140020293 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000448866
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000448866 7.434±0.00 10.602±0.00 3.252±0.00 2.536±1.06 0.803±0.00 0.649±0.38 4.507±0.00 4.655±0.00 8.602±5.35 0.507±0.00 4.504±2.54 13.012±1.49 1.090±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030C CIL_00030C_0001 CGP 7:139523856-139777778
CIL_00023M CIL_00023M_0002 CGP 7:139561570-140020325
CIL_000309 CIL_000309_0002 CGP 7:139777051-140063721

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004497 IEA monooxygenase activity
GO:0004796 IEA thromboxane-A synthase activity
GO:0005506 IEA iron ion binding
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006690 TAS icosanoid metabolic process
GO:0006805 TAS xenobiotic metabolic process
GO:0016021 IEA integral component of membrane
GO:0016705 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0019369 TAS arachidonic acid metabolic process
GO:0019371 TAS cyclooxygenase pathway
GO:0020037 IEA heme binding
GO:0044281 TAS small molecule metabolic process
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000003017 Tbxas1-001 protein_coding Mus_musculus 0 1517
ENSMUST00000161781 Tbxas1-002 retained_intron Mus_musculus 0 1301
ENSMUST00000159226 Tbxas1-004 retained_intron Mus_musculus 0 1061
ENSMUST00000161360 Tbxas1-005 retained_intron Mus_musculus 0 758
ENSMUST00000160963 Tbxas1-006 protein_coding Mus_musculus 0 398
ENSMUST00000162521 Tbxas1-003 protein_coding Mus_musculus 0 272
ENSMUST00000162656 Tbxas1-007 processed_transcript Mus_musculus 3e-30 137

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