C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB8A, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000003121 Rab8a-001 ENSMUSG00000003037 10090 + 8:72161200-72183904 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003121
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003121 12.365±2.06 11.373±4.56 7.992±3.59 9.758±5.77 14.001±5.01 25.598±3.15 4.222±0.55 18.540±1.02 14.629±4.14 13.579±0.95 1.431±0.20 11.907±4.74 10.698±5.71 6.646±2.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000IM CIL_0000IM_0002 CGP 8:72134975-72183904
CIL_0000IL CIL_0000IL_0002 CGP 8:72161200-72200995

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005525 ISS GTP binding
GO:0005794 IEA Golgi apparatus
GO:0005813 ISO centrosome
GO:0005886 IDA plasma membrane
GO:0005929 ISO cilium
GO:0006904 IEA vesicle docking involved in exocytosis
GO:0007264 IEA small GTPase mediated signal transduction
GO:0007409 ISS axonogenesis
GO:0014069 IEA postsynaptic density
GO:0015031 IEA protein transport
GO:0016023 IEA cytoplasmic membrane-bounded vesicle
GO:0017137 ISS Rab GTPase binding
GO:0019003 ISS GDP binding
GO:0019901 IEA protein kinase binding
GO:0030140 IDA trans-Golgi network transport vesicle
GO:0030425 IEA dendrite
GO:0031489 IEA myosin V binding
GO:0031513 IDA nonmotile primary cilium
GO:0032869 ISS cellular response to insulin stimulus
GO:0032880 IEA regulation of protein localization
GO:0036064 IDA ciliary basal body
GO:0042384 ISS cilium assembly
GO:0043025 IEA neuronal cell body
GO:0045335 ISS phagocytic vesicle
GO:0048169 IEA regulation of long-term neuronal synaptic plasticity
GO:0048210 IEA Golgi vesicle fusion to target membrane
GO:0051223 IEA regulation of protein transport
GO:0055037 IDA recycling endosome
GO:0055038 ISS recycling endosome membrane
GO:0070062 IEA extracellular vesicular exosome
GO:0072372 IEA primary cilium
GO:0072659 ISS protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000300935 RAB8A-001 protein_coding Homo_sapiens 0 1018
ENST00000586682 RAB8A-002 protein_coding Homo_sapiens 0 806
ENST00000587156 RAB8A-007 retained_intron Homo_sapiens 0 627
ENST00000588105 RAB8A-006 processed_transcript Homo_sapiens 0 220
ENST00000589697 RAB8A-003 retained_intron Homo_sapiens 0 464
ENST00000590899 RAB8A-005 retained_intron Homo_sapiens 0 403
ENST00000592971 RAB8A-004 retained_intron Homo_sapiens 0 276

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