C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family F (GCN20), member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000003319 Abcf3-001 ENSMUSG00000003234 10090 + 16:20548577-20561379 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003319
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003319 12.629±0.64 3.198±0.69 9.406±1.09 11.458±4.15 6.024±1.68 6.918±0.96 5.529±1.42 9.693±2.36 8.727±2.95 7.660±1.10 9.511±2.51 8.447±4.34 12.000±2.53 15.594±8.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005G2 CIL_0005G2_0002 CGP 16:20535478-20561379
CIL_0005FP CIL_0005FP_0002 CGP 16:20548577-20605377

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0016887 IEA ATPase activity
GO:0051607 IEA defense response to virus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000292808 ABCF3-002 protein_coding Homo_sapiens 0 2625
ENST00000421340 ABCF3-010 nonsense_mediated_decay Homo_sapiens 0 446
ENST00000429586 ABCF3-001 protein_coding Homo_sapiens 0 2747
ENST00000463685 ABCF3-012 retained_intron Homo_sapiens 0 337
ENST00000466416 ABCF3-015 retained_intron Homo_sapiens 0 387
ENST00000466742 ABCF3-008 retained_intron Homo_sapiens 0 651
ENST00000468892 ABCF3-007 retained_intron Homo_sapiens 0 651
ENST00000471226 ABCF3-016 retained_intron Homo_sapiens 0 335
ENST00000472608 ABCF3-020 retained_intron Homo_sapiens 0 769
ENST00000473311 ABCF3-003 retained_intron Homo_sapiens 0 2196
ENST00000475728 ABCF3-019 retained_intron Homo_sapiens 0 276
ENST00000478288 ABCF3-013 retained_intron Homo_sapiens 0 503
ENST00000480539 ABCF3-018 retained_intron Homo_sapiens 0 294
ENST00000480562 ABCF3-009 retained_intron Homo_sapiens 0 965
ENST00000481116 ABCF3-014 retained_intron Homo_sapiens 0 414
ENST00000485921 ABCF3-011 retained_intron Homo_sapiens 0 446
ENST00000489719 ABCF3-017 retained_intron Homo_sapiens 0 302
ENST00000498136 ABCF3-005 retained_intron Homo_sapiens 0 606

Loading