C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, beta 3 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000003442 Cacnb3-201 ENSMUSG00000003352 10090 + 15:98634764-98644530 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003442
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003442 2.597±1.43 2.820±1.40 7.179±0.04 35.790±28.60 3.713±0.98 3.872±0.37 0.618±0.12 1.183±0.15 0.131±0.06 2.096±0.32 0.549±0.03 7.651±3.54 4.683±1.52 0.270±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DH CIL_0003DH_0003 CGP 15:98589994-98644530
CIL_0003DO CIL_0003DO_0003 CGP 15:98632220-98662889

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0005891 IDA voltage-gated calcium channel complex
GO:0006816 IEA calcium ion transport
GO:0008331 TAS high voltage-gated calcium channel activity
GO:0016020 IEA membrane
GO:0016324 IEA apical plasma membrane
GO:0019901 IEA protein kinase binding
GO:0034765 IEA regulation of ion transmembrane transport
GO:0050852 IMP T cell receptor signaling pathway
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000301050 CACNB3-001 protein_coding Homo_sapiens 0 2582
ENST00000536187 CACNB3-004 protein_coding Homo_sapiens 0 2313
ENST00000540990 CACNB3-002 protein_coding Homo_sapiens 0 2311
ENST00000547230 CACNB3-018 protein_coding Homo_sapiens 0 1954
ENST00000547392 CACNB3-006 protein_coding Homo_sapiens 0 1495
ENST00000547693 CACNB3-020 retained_intron Homo_sapiens 0 401
ENST00000547818 CACNB3-015 protein_coding Homo_sapiens 0 1203
ENST00000548279 CACNB3-017 protein_coding Homo_sapiens 0 767
ENST00000548860 CACNB3-005 retained_intron Homo_sapiens 0 1631
ENST00000548874 CACNB3-009 nonsense_mediated_decay Homo_sapiens 0 401
ENST00000549226 CACNB3-003 retained_intron Homo_sapiens 0 691
ENST00000549971 CACNB3-014 processed_transcript Homo_sapiens 0 492
ENST00000550064 CACNB3-024 protein_coding Homo_sapiens 0 1027
ENST00000550168 CACNB3-011 processed_transcript Homo_sapiens 0 691
ENST00000550190 CACNB3-022 protein_coding Homo_sapiens 0 237
ENST00000550391 CACNB3-008 nonsense_mediated_decay Homo_sapiens 0 902
ENST00000550483 CACNB3-023 nonsense_mediated_decay Homo_sapiens 0 623
ENST00000550771 CACNB3-016 retained_intron Homo_sapiens 0 534
ENST00000551544 CACNB3-019 nonsense_mediated_decay Homo_sapiens 0 2350
ENST00000551716 CACNB3-010 retained_intron Homo_sapiens 0 401
ENST00000552022 CACNB3-013 processed_transcript Homo_sapiens 0 689
ENST00000552480 CACNB3-021 retained_intron Homo_sapiens 0 865

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