C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003DH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000061445-ENSDARG00000001881 CGP 7955 23:14052948-14292297
GeneTranscriptPositionBiotype
ENSDARG00000001881 (cacnb3a)
calcium channel, voltage-dependent, beta 3a 		ENSDART00000087280 (cacnb3a-001) 14209498-14292297 protein_coding
ENSDART00000143529 (cacnb3a-002) 14209498-14254225 retained_intron
ENSDARG00000061445 (adcy6a)
adenylate cyclase 6a 		ENSDART00000087654 (adcy6a-001) 14052948-14171075 protein_coding
ENSDART00000154908 (adcy6a-201) 14053214-14169181 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0003DH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000174233-ENSG00000167535 CGP 9606 12:48766194-48828941
GeneTranscriptPositionBiotype
ENSG00000167535 (CACNB3)
calcium channel, voltage-dependent, beta 3 subunit 		ENST00000301050 (CACNB3-001) 48818731-48828941 protein_coding
ENST00000536187 (CACNB3-004) 48815587-48828219 protein_coding
ENST00000540990 (CACNB3-002) 48814451-48828200 protein_coding
ENST00000547230 (CACNB3-018) 48818909-48828941 protein_coding
ENST00000547392 (CACNB3-006) 48818504-48828336 protein_coding
ENST00000547693 (CACNB3-020) 48813794-48823984 retained_intron
ENST00000547818 (CACNB3-015) 48818484-48826518 protein_coding
ENST00000548279 (CACNB3-017) 48818787-48824697 protein_coding
ENST00000548860 (CACNB3-005) 48814893-48828941 retained_intron
ENST00000548874 (CACNB3-009) 48815591-48825484 nonsense_mediated_decay
ENST00000549226 (CACNB3-003) 48814480-48825161 retained_intron
ENST00000549971 (CACNB3-014) 48818406-48824312 processed_transcript
ENST00000550064 (CACNB3-024) 48817866-48825720 protein_coding
ENST00000550168 (CACNB3-011) 48815602-48824733 processed_transcript
ENST00000550190 (CACNB3-022) 48823446-48828941 protein_coding
ENST00000550391 (CACNB3-008) 48814432-48825724 nonsense_mediated_decay
ENST00000550483 (CACNB3-023) 48823779-48826518 nonsense_mediated_decay
ENST00000550771 (CACNB3-016) 48818793-48823961 retained_intron
ENST00000551544 (CACNB3-019) 48818909-48828941 nonsense_mediated_decay
ENST00000551716 (CACNB3-010) 48815600-48823972 retained_intron
ENST00000552022 (CACNB3-013) 48818386-48824733 processed_transcript
ENST00000552465 (CACNB3-012) 48815612-48817312 retained_intron
ENST00000552480 (CACNB3-021) 48825115-48827868 retained_intron
ENST00000552812 (CACNB3-007) 48819778-48821489 retained_intron
ENSG00000174233 (ADCY6)
adenylate cyclase 6 		ENST00000307885 (ADCY6-002) 48766329-48784129 protein_coding
ENST00000357869 (ADCY6-201) 48766198-48783441 protein_coding
ENST00000547260 (ADCY6-005) 48766194-48774496 retained_intron
ENST00000548351 (ADCY6-007) 48771743-48774024 processed_transcript
ENST00000548820 (ADCY6-009) 48777672-48778424 protein_coding
ENST00000550422 (ADCY6-003) 48766198-48789037 protein_coding
ENST00000551435 (ADCY6-006) 48776294-48778185 retained_intron
ENST00000552090 (ADCY6-008) 48773943-48776484 processed_transcript
ENST00000552099 (ADCY6-004) 48771257-48774754 retained_intron
ENSG00000207467 (Y_RNA)
Y RNA 		ENST00000384736 (Y_RNA.1-769) 48809911-48810016 misc_RNA
ENSG00000257653 (RP11-579D7.2)
 ENST00000548742 (RP11-579D7.2-001) 48766194-48767323 antisense
ENSG00000257660 (RP11-579D7.4)
 ENST00000547774 (RP11-579D7.4-001) 48789147-48790535 lincRNA
ENST00000549864 (RP11-579D7.4-002) 48789576-48790535 lincRNA
ENSG00000264201 (MIR4701)
microRNA 4701 		ENST00000583094 (MIR4701-201) 48771975-48772037 miRNA
ENSG00000271547 (RP11-579D7.8)
 ENST00000605409 (RP11-579D7.8-001) 48800576-48801086 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0003DH_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022994-ENSMUSG00000003352 CGP 10090 15:98589994-98644530
GeneTranscriptPositionBiotype
ENSMUSG00000003352 (Cacnb3)
calcium channel, voltage-dependent, beta 3 subunit 		ENSMUST00000003442 (Cacnb3-201) 98634764-98644530 protein_coding
ENSMUST00000109150 (Cacnb3-202) 98632220-98644530 protein_coding
ENSMUSG00000022994 (Adcy6)
adenylate cyclase 6 		ENSMUST00000096224 (Adcy6-201) 98589994-98607633 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003DH_0001ENSDARG00000001881ENSDART00000087280ENSDART00000143529ENSDARG00000061445ENSDART00000087654ENSDART00000154908CIL_0003DH_0002ENSG00000167535ENST00000301050ENST00000536187ENST00000540990ENST00000547230ENST00000547392ENST00000547693ENST00000547818ENST00000548279ENST00000548860ENST00000548874ENST00000549226ENST00000549971ENST00000550064ENST00000550168ENST00000550190ENST00000550391ENST00000550483ENST00000550771ENST00000551544ENST00000551716ENST00000552022ENST00000552465ENST00000552480ENST00000552812ENSG00000174233ENST00000307885ENST00000357869ENST00000547260ENST00000548351ENST00000548820ENST00000550422ENST00000551435ENST00000552090ENST00000552099ENSG00000207467ENST00000384736ENSG00000257653ENST00000548742ENSG00000257660ENST00000547774ENST00000549864ENSG00000264201ENST00000583094ENSG00000271547ENST00000605409CIL_0003DH_0003ENSMUSG00000003352ENSMUST00000003442ENSMUST00000109150ENSMUSG00000022994ENSMUST00000096224
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003DH_0001ENSDARG00000001881ENSDART00000087280ENSDART00000143529ENSDARG00000061445ENSDART00000087654ENSDART00000154908CIL_0003DH_0002ENSG00000167535ENST00000301050ENST00000536187ENST00000540990ENST00000547230ENST00000547392ENST00000547818ENST00000548279ENST00000550190ENST00000552480ENST00000552812ENSG00000174233ENST00000307885ENST00000357869ENST00000547260ENST00000550422ENST00000552090ENST00000552099ENSG00000207467ENST00000384736ENSG00000257653ENST00000548742ENSG00000257660ENST00000547774ENST00000549864ENSG00000264201ENST00000583094ENSG00000271547ENST00000605409CIL_0003DH_0003ENSMUSG00000003352ENSMUST00000003442ENSMUST00000109150ENSMUSG00000022994ENSMUST00000096224
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000001881 ENSDART00000087280 N/A N/A N/A 0.347±0.00 N/A N/A 0.023±0.00 0.079±0.00 0.016±0.00 N/A 0.152±0.00 N/A N/A N/A
ENSDART00000143529 N/A N/A N/A 1.896±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000061445 ENSDART00000087654 N/A N/A N/A 0.282±0.00 N/A N/A 1.024±0.16 1.279±0.00 N/A N/A 0.759±0.00 N/A N/A N/A
ENSDART00000154908 N/A N/A N/A N/A N/A N/A N/A N/A 0.052±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000167535 ENST00000301050 1.779±0.00 0.914±0.00 N/A 5.198±1.14 1.123±0.00 1.948±1.39 0.526±0.00 1.776±0.00 0.196±0.00 2.859±0.00 N/A 19.752±17.44 2.835±0.22 3.379±0.00
ENST00000536187 N/A N/A 0.480±0.00 N/A N/A 2.051±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540990 N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A N/A N/A N/A 1.923±1.00 N/A 2.750±0.00
ENST00000547230 1.353±0.00 2.090±0.00 0.130±0.00 13.844±0.00 3.084±0.00 8.201±0.00 0.553±0.00 1.607±0.00 0.220±0.00 0.292±0.00 N/A 11.404±8.33 N/A 11.684±0.00
ENST00000547392 N/A N/A N/A N/A N/A N/A 0.253±0.00 N/A N/A N/A 0.707±0.00 N/A N/A N/A
ENST00000547693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547818 N/A N/A N/A N/A 2.127±0.00 N/A 0.294±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000548279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.846±0.00 N/A N/A N/A
ENST00000548860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549226 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549971 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550168 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550190 3.629±0.00 N/A N/A 15.426±0.68 5.634±0.00 8.646±0.00 N/A N/A N/A N/A N/A N/A N/A 17.983±0.00
ENST00000550391 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550483 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551544 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551716 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552022 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552480 N/A N/A 0.570±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 6.012±0.00 4.084±0.00 N/A
ENST00000552812 N/A N/A N/A N/A N/A 1.051±0.00 N/A N/A N/A N/A N/A 0.602±0.00 N/A N/A
ENSG00000174233 ENST00000307885 N/A 1.087±0.00 N/A N/A 2.121±0.00 N/A 1.991±0.00 0.655±0.00 N/A 1.377±0.00 0.316±0.00 N/A N/A N/A
ENST00000357869 3.707±0.00 1.196±0.00 N/A 0.840±0.61 7.391±6.31 1.212±0.00 1.471±0.00 N/A N/A 1.047±0.00 1.347±0.00 2.256±0.10 0.964±0.16 2.665±1.97
ENST00000547260 N/A 1.644±0.00 N/A 0.608±0.00 N/A 1.354±0.00 N/A N/A N/A N/A N/A 1.890±0.00 N/A N/A
ENST00000548351 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548820 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550422 3.251±0.00 1.027±0.00 N/A N/A 4.110±0.00 3.175±0.00 N/A 10.429±0.00 2.268±0.00 5.624±0.00 N/A N/A 2.212±0.00 N/A
ENST00000551435 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.418±0.00 N/A
ENST00000552099 N/A N/A N/A N/A N/A N/A N/A 1.667±0.00 N/A N/A N/A N/A N/A 0.779±0.00
ENSG00000207467 ENST00000384736 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.506±0.00
ENSG00000257653 ENST00000548742 15.504±0.00 7.590±0.00 N/A 4.289±0.00 35.744±0.00 11.774±0.00 32.556±0.00 34.392±0.00 6.423±0.00 14.022±0.00 2.408±0.16 13.934±4.73 6.351±2.43 10.231±0.00
ENSG00000257660 ENST00000547774 0.144±0.00 N/A N/A 0.861±0.00 N/A 0.551±0.23 0.172±0.00 1.219±0.00 N/A 0.281±0.00 N/A 0.280±0.12 0.155±0.00 0.589±0.00
ENST00000549864 N/A N/A N/A 0.464±0.00 N/A N/A N/A N/A N/A N/A N/A 0.378±0.00 N/A 0.441±0.00
ENSG00000264201 ENST00000583094 N/A N/A N/A N/A N/A N/A N/A N/A 1.104±0.00 N/A N/A N/A N/A N/A
ENSG00000271547 ENST00000605409 N/A 0.089±0.00 N/A N/A 0.048±0.00 N/A N/A 0.140±0.00 N/A 0.231±0.00 N/A 0.450±0.00 N/A 0.083±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000003352 ENSMUST00000003442 2.597±1.43 2.820±1.40 7.179±0.04 35.790±28.60 3.713±0.98 3.872±0.37 0.618±0.12 1.183±0.15 0.131±0.06 2.096±0.32 0.549±0.03 7.651±3.54 4.683±1.52 0.270±0.14
ENSMUST00000109150 13.741±13.23 4.450±2.41 29.070±2.36 84.307±1.51 32.036±12.51 32.001±10.40 0.430±0.16 4.458±2.57 0.280±0.06 8.069±4.05 0.663±0.18 30.505±13.62 2.705±0.53 0.350±0.34
ENSMUSG00000022994 ENSMUST00000096224 25.997±6.10 7.901±5.28 11.269±4.56 7.484±2.16 10.775±2.10 47.292±16.21 29.490±10.61 21.955±9.27 5.608±2.82 17.537±1.42 5.965±0.92 19.028±8.21 2.613±1.19 0.784±0.42

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